Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_H18
         (868 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK055618-1|BAB70973.1|  272|Homo sapiens protein ( Homo sapiens ...    59   2e-08

>AK055618-1|BAB70973.1|  272|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31056 fis, clone HSYRA2000760. ).
          Length = 272

 Score = 58.8 bits (136), Expect = 2e-08
 Identities = 26/65 (40%), Positives = 40/65 (61%)
 Frame = +1

Query: 292 LDFQQVSFSVTRPCTSMNDQEKPKREEEKKVGLIQRFKEMYRDYWYVLLPVHMATSAVWF 471
           + F++V  S      +   +E+P   ++K + L QRFK+ +R Y  VL+PVH+ TS VWF
Sbjct: 90  VSFRRVFSSSATAQGTPEKKEEPDPLQDKSISLYQRFKKTFRQYGKVLIPVHLITSGVWF 149

Query: 472 GSCYY 486
           G+ YY
Sbjct: 150 GTFYY 154



 Score = 35.1 bits (77), Expect = 0.33
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = +2

Query: 596 YFRVLGVTETLLKPLKESGAGYFALAFALYKLVTPLRYQLXL 721
           +  ++G+ ++++  LK S +G    A+AL+K+ TP RY + L
Sbjct: 165 FLELIGLPDSVVSILKNSQSGNALTAYALFKIATPARYTVTL 206


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,232,101
Number of Sequences: 237096
Number of extensions: 2120934
Number of successful extensions: 7311
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 7206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7311
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 11095746082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)