Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_H18
         (868 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-20|CAB60503.2|  263|Caenorhabditis elegans Hypothetical...    40   0.002
Z19154-5|CAA79557.1|  162|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AL033536-2|CAA22139.1|  319|Caenorhabditis elegans Hypothetical ...    29   5.7  
AF166167-1|AAD49856.1|  732|Caenorhabditis elegans adducin-relat...    29   5.7  
AF039043-5|AAK70639.1|  732|Caenorhabditis elegans Adducin prote...    29   5.7  
AF039043-4|AAL32219.1|  702|Caenorhabditis elegans Adducin prote...    29   5.7  
AF039043-3|AAM54181.1|  682|Caenorhabditis elegans Adducin prote...    29   5.7  
Z48045-11|CAM33500.1|  887|Caenorhabditis elegans Hypothetical p...    28   9.9  
Z48045-10|CAA88101.2|  849|Caenorhabditis elegans Hypothetical p...    28   9.9  

>AL132860-20|CAB60503.2|  263|Caenorhabditis elegans Hypothetical
           protein Y56A3A.22 protein.
          Length = 263

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +1

Query: 352 EKPKREEEKKVGLIQRFKEMYRDYWYVLLPVHMATSAVWFGSCYYTVR 495
           E+ K EE  K  L  + K  ++ YWY+ +P H A+   WF + Y  V+
Sbjct: 69  EQMKAEEAPKT-LFAKVKYYFKRYWYIAVPAHAASCTAWFIALYLVVK 115


>Z19154-5|CAA79557.1|  162|Caenorhabditis elegans Hypothetical
           protein C40H1.6 protein.
          Length = 162

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +1

Query: 352 EKPKREEEKKVGLIQRFKEMYRDYWYVLLPVHMATSAVWFGSCYYTVRR*EYE 510
           E+ K E E  +  +Q  K+  RD W+ L      T   WFG C+Y     +YE
Sbjct: 29  ERLKEEYEAIIAAVQNNKDCDRD-WFQLESNERGTK--WFGKCWYFHNMVKYE 78


>AL033536-2|CAA22139.1|  319|Caenorhabditis elegans Hypothetical
           protein Y53C10A.5 protein.
          Length = 319

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 8/104 (7%)
 Frame = +2

Query: 482 IILLGGENMRKLSYDIIFNMLQQY-YKNVFIFQWGGRH*YFRVLGVTETLLKPLKESGAG 658
           I+ + G+N       +++ + QQ  Y+   I QW   H Y  +LG+   L   + +    
Sbjct: 181 IVEVNGDNCMLCVGPLLWILYQQMTYQRDAITQWATFHWYILLLGIYVALTNQIHKWSHT 240

Query: 659 YFAL---AFALYK--LVTPLRYQL--XLXDHLCY*XXTXPGWXN 769
           YF L      L K  ++ P  +     +  H CY   T  GW N
Sbjct: 241 YFGLPTWVVFLQKAHIILPRSHHKIHHISPHACYYCIT-TGWLN 283


>AF166167-1|AAD49856.1|  732|Caenorhabditis elegans adducin-related
           protein protein.
          Length = 732

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +1

Query: 316 SVTRPCTSMNDQEKPKREEEKK 381
           + +R CT+ +++EKP ++E+KK
Sbjct: 697 TTSRSCTTASEEEKPTKDEKKK 718


>AF039043-5|AAK70639.1|  732|Caenorhabditis elegans Adducin protein
           1, isoform b protein.
          Length = 732

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +1

Query: 316 SVTRPCTSMNDQEKPKREEEKK 381
           + +R CT+ +++EKP ++E+KK
Sbjct: 697 TTSRSCTTASEEEKPTKDEKKK 718


>AF039043-4|AAL32219.1|  702|Caenorhabditis elegans Adducin protein
           1, isoform c protein.
          Length = 702

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +1

Query: 316 SVTRPCTSMNDQEKPKREEEKK 381
           + +R CT+ +++EKP ++E+KK
Sbjct: 667 TTSRSCTTASEEEKPTKDEKKK 688


>AF039043-3|AAM54181.1|  682|Caenorhabditis elegans Adducin protein
           1, isoform d protein.
          Length = 682

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +1

Query: 316 SVTRPCTSMNDQEKPKREEEKK 381
           + +R CT+ +++EKP ++E+KK
Sbjct: 647 TTSRSCTTASEEEKPTKDEKKK 668


>Z48045-11|CAM33500.1|  887|Caenorhabditis elegans Hypothetical
           protein C41C4.5b protein.
          Length = 887

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 682 QGKGKCKISSTRFFQRF*ECLCD 614
           + KGK ++   R+ Q F +CLCD
Sbjct: 197 KAKGKPRLRDRRYHQAFAQCLCD 219


>Z48045-10|CAA88101.2|  849|Caenorhabditis elegans Hypothetical
           protein C41C4.5a protein.
          Length = 849

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 682 QGKGKCKISSTRFFQRF*ECLCD 614
           + KGK ++   R+ Q F +CLCD
Sbjct: 159 KAKGKPRLRDRRYHQAFAQCLCD 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,909,439
Number of Sequences: 27780
Number of extensions: 349959
Number of successful extensions: 807
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)