Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_H17
         (1259 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    25   1.4  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    25   1.4  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    24   2.4  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    24   2.4  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    24   2.4  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    24   2.4  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.2  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.2  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   4.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   4.2  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       23   4.2  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.2  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   4.2  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 195 CLYIFMYFIALVIIIYMY 142
           C  I++YF+ L +IIY Y
Sbjct: 219 CYGIWVYFVPLFLIIYSY 236


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 195 CLYIFMYFIALVIIIYMY 142
           C  I++YF+ L +IIY Y
Sbjct: 95  CYGIWVYFVPLFLIIYSY 112


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 55  PPLGGFFCCILFIVA 99
           P LG +F CI+F+VA
Sbjct: 255 PLLGSYFNCIMFMVA 269


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 55  PPLGGFFCCILFIVA 99
           P LG +F CI+F+VA
Sbjct: 255 PLLGSYFNCIMFMVA 269


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 55  PPLGGFFCCILFIVA 99
           P LG +F CI+F+VA
Sbjct: 255 PLLGSYFNCIMFMVA 269


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 55  PPLGGFFCCILFIVA 99
           P LG +F CI+F+VA
Sbjct: 323 PLLGSYFNCIMFMVA 337


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 55  PPLGGFFCCILFIVA 99
           P +G +F CI+F+VA
Sbjct: 255 PLIGSYFNCIMFMVA 269


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 55  PPLGGFFCCILFIVA 99
           P +G +F CI+F+VA
Sbjct: 255 PLIGSYFNCIMFMVA 269


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 55  PPLGGFFCCILFIVA 99
           P +G +F CI+F+VA
Sbjct: 255 PLIGSYFNCIMFMVA 269


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 55  PPLGGFFCCILFIVA 99
           P +G +F CI+F+VA
Sbjct: 323 PLIGSYFNCIMFMVA 337


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 186 IFMYFIALVIIIYMY 142
           I MY+  LV+IIY Y
Sbjct: 210 IMMYWFPLVVIIYTY 224


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 55  PPLGGFFCCILFIVA 99
           P LG +F CI+F+VA
Sbjct: 292 PLLGTYFNCIMFMVA 306


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -3

Query: 201 ISCLYIFMYFIALVIIIYMY 142
           ++ ++ F Y I +++IIY Y
Sbjct: 212 VATIFTFSYCIPMILIIYYY 231


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,616
Number of Sequences: 438
Number of extensions: 2347
Number of successful extensions: 15
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43102617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)