Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_H13
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    52   1e-07
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    42   1e-04
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    39   0.001
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    37   0.003
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    29   1.1  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    27   4.6  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    26   6.1  
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom...    26   6.1  

>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 51.6 bits (118), Expect = 1e-07
 Identities = 22/57 (38%), Positives = 34/57 (59%)
 Frame = +2

Query: 434 IAQVDCTVHAKLCHENEITGYPTLFYFHKNTFTPVEYKGTRDLPSLTLFLSEAFSVK 604
           I ++D   H+ +  +  ITG+PTL +F  +   PV+Y   RD+ SLT F+SE   +K
Sbjct: 76  IGKIDADTHSDVADKYHITGFPTLIWFPPDGSEPVQYSNARDVDSLTQFVSEKTGIK 132



 Score = 35.5 bits (78), Expect = 0.010
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +1

Query: 325 GNFIMFYAPWCRHCTEFYPIWSELAEL 405
           G  I FYA WC HC    P++ EL  L
Sbjct: 41  GALIEFYATWCGHCKSLAPVYEELGAL 67



 Score = 31.5 bits (68), Expect = 0.16
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 268 SSVYEYNPSNF-KFQIEEMDGNFIMFYAPWCRHCTEFYPIWSELAEL 405
           S+V E +  NF K  +++     + FYA WC +C    P +  L ++
Sbjct: 140 SNVVELDSLNFDKVVMDDKKDVLVEFYADWCGYCKRLAPTYETLGKV 186


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +1

Query: 268 SSVYEYNPSNFKFQIEEMDGNFIMFYAPWCRHCTEFYPIWSELA 399
           S+  E N  NF+  ++    + ++FYAPWC +C +  P + +LA
Sbjct: 31  SNTIELNSKNFRKFVKAKGPSLVVFYAPWCGYCKKLVPTYQKLA 74


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 20/51 (39%), Positives = 27/51 (52%)
 Frame = +2

Query: 431 AIAQVDCTVHAKLCHENEITGYPTLFYFHKNTFTPVEYKGTRDLPSLTLFL 583
           ++ +VDCT    LC E  I GYPTL  F KN     +Y G R   +L  ++
Sbjct: 74  SLVEVDCTEEGDLCSEYSIRGYPTLNVF-KNGKQISQYSGPRKHDALVKYM 123



 Score = 36.7 bits (81), Expect = 0.004
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 310 IEEMDGNFIMFYAPWCRHCTEFYPIWSELAE 402
           ++E     + FYAPWC HC    P + +LAE
Sbjct: 370 MDETKDVLVEFYAPWCGHCKNLAPTYEKLAE 400



 Score = 31.5 bits (68), Expect = 0.16
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 334 IMFYAPWCRHCTEFYPIWSELAE 402
           + FYAPWC HC    P +   A+
Sbjct: 44  VKFYAPWCGHCKALAPEYESAAD 66



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 720 FFVPWCRASQRMAPIWADLAVHYAHNT 800
           F+ PWC   + +AP +  LA  Y+ ++
Sbjct: 380 FYAPWCGHCKNLAPTYEKLAEEYSDDS 406


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = +2

Query: 395 WQSWLIPRXSKFAIAQVDCTVHAKLCHENEITGYPTLFYFHKNTFTPVEYKGTRDLPSLT 574
           W +       K  +A ++C V  + C +  I  +PT  +F +  F  VEY G  +   L 
Sbjct: 320 WYAMANRMRGKLNVAHINCAVSKRACKQYSIQYFPTFLFFKEEAF--VEYVGLPNEGDLV 377

Query: 575 LFLSEA 592
            F  EA
Sbjct: 378 SFAEEA 383



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 331 FIMFYAPWCRHCTEFYPIWSELAE 402
           FI +Y P C  C    P+W  + E
Sbjct: 46  FIKYYLPSCGACKRLGPMWDNMVE 69


>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 16/68 (23%), Positives = 28/68 (41%)
 Frame = +2

Query: 395 WQSWLIPRXSKFAIAQVDCTVHAKLCHENEITGYPTLFYFHKNTFTPVEYKGTRDLPSLT 574
           W S       +  +AQV+C    ++C+   I  +PT   F    F  ++Y G      L 
Sbjct: 219 WSSITRNTDERLKMAQVNCDEEKEMCNHFHIKKFPTFRVF--QGFDSIQYNGPLKYQQLL 276

Query: 575 LFLSEAFS 598
            + ++  S
Sbjct: 277 SYSNQVAS 284


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 422 SKFAIAQVDCTVHAKLCHENEITGYPTLFYFH 517
           +K     VDC    + C E  I  +P+L Y++
Sbjct: 152 NKIKFKSVDCASSLEKCEEIGINSFPSLVYYN 183


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 329 FPSISSIWNLKLLGLYS*TELCSGATRYGNTN 234
           FP +   W+LKL+G ++      G   YG +N
Sbjct: 589 FPQVRDGWDLKLIGKWTHEGTFPGNELYGESN 620


>SPBC17D1.02 |||diphthamide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 503

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 605 TEGKQSKQPNEVKTYSGMSYLNDLNIEKFVS 697
           +EGKQSK+P+EV T         L   KFV+
Sbjct: 380 SEGKQSKEPSEVLTEESAEPHFSLITGKFVN 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,606,675
Number of Sequences: 5004
Number of extensions: 76595
Number of successful extensions: 209
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)