Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_H12
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    29   0.67 
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    27   4.7  
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom...    26   6.2  

>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +3

Query: 735 RVPPSASAQFQPGQGGHNQAQRQNGQDGDASATTSNQQQGAKPKSNKP 878
           R  PSA    QP  G  NQ Q+ N      +   +NQ +  KP +N P
Sbjct: 132 RQSPSADQTVQPQPGSTNQQQQNN------TNPINNQPEDTKPNTNSP 173


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 822 HLHPGHFGAEPDYVLPAPAGIARTHSA 742
           HL+P  FG + + +L AP G  +T+ A
Sbjct: 526 HLYPIAFGTDENILLCAPTGAGKTNVA 552


>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 370

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 502 QAPWLPPPIFPSXKVADEAVKELHAEED 585
           +AP LP P+ P+ K+    V   H E+D
Sbjct: 234 KAPELPKPLIPAMKLMSTIVCVKHVEKD 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,978,895
Number of Sequences: 5004
Number of extensions: 50486
Number of successful extensions: 181
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)