Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_H12
(884 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical pr... 135 5e-32
U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box... 89 5e-18
U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box... 85 8e-17
Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical pr... 84 1e-16
AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical ... 84 1e-16
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 56 4e-08
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 56 4e-08
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 56 4e-08
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 56 4e-08
U55364-5|AAQ23124.1| 368|Caenorhabditis elegans Prion-like-(q/n... 31 1.1
U55364-4|AAA97972.1| 382|Caenorhabditis elegans Prion-like-(q/n... 31 1.1
AC024214-13|AAM97984.1| 296|Caenorhabditis elegans Collagen pro... 30 1.9
AL023493-2|CAD44137.1| 909|Caenorhabditis elegans Hypothetical ... 30 2.5
AL023493-1|CAA18898.1| 947|Caenorhabditis elegans Hypothetical ... 30 2.5
AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen prot... 29 3.3
Z77666-12|CAJ43911.2| 896|Caenorhabditis elegans Hypothetical p... 29 4.4
Z77666-9|CAJ43912.1| 541|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z77666-8|CAJ43910.1| 493|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr... 29 4.4
U28928-11|AAA68342.3| 824|Caenorhabditis elegans Hypothetical p... 29 5.8
>Z81525-8|CAB04257.1| 208|Caenorhabditis elegans Hypothetical
protein F33A8.3 protein.
Length = 208
Score = 135 bits (326), Expect = 5e-32
Identities = 62/89 (69%), Positives = 69/89 (77%)
Frame = +2
Query: 239 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAV 418
V A KV GTVKWFNVK+GYGFINR DT ED+FVHQTAI NNP K +RS+GD E V F +
Sbjct: 16 VKATKVKGTVKWFNVKNGYGFINRTDTNEDIFVHQTAIINNNPNKYLRSLGDNEEVMFDI 75
Query: 419 VAGEKGFEAAGVTGPGGEPVKGSPYAADK 505
V G KG EAA VTGP G PV+GS YAAD+
Sbjct: 76 VEGSKGLEAASVTGPDGGPVQGSKYAADR 104
>U88173-8|AAK21380.1| 267|Caenorhabditis elegans C.elegans y-box
protein 2 protein.
Length = 267
Score = 88.6 bits (210), Expect = 5e-18
Identities = 44/85 (51%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Frame = +2
Query: 242 IAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRK-AVRSVGDGEAVEFAV 418
I + G VKW++V YGFI+RND ++D+FVHQTAIA++ K +R++GD E V F +
Sbjct: 62 ITTGLQGKVKWYSVLRRYGFISRNDGEKDIFVHQTAIAKSATEKFYLRTLGDDEEVLFDL 121
Query: 419 VAGEKGFEAAGVTGPGGEPVKGSPY 493
V G+ G EAA VTGP G+ V GS Y
Sbjct: 122 VEGKNGPEAANVTGPNGDNVIGSRY 146
>U80450-3|AAB37828.1| 265|Caenorhabditis elegans C.elegans y-box
protein 3 protein.
Length = 265
Score = 84.6 bits (200), Expect = 8e-17
Identities = 42/86 (48%), Positives = 59/86 (68%), Gaps = 1/86 (1%)
Frame = +2
Query: 239 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRK-AVRSVGDGEAVEFA 415
V+ + G VKW++V YGFI+R+D ++DVFVHQTAI++++ K +R++ D E V F
Sbjct: 59 VLTAGLQGKVKWYSVLRRYGFISRSDGEKDVFVHQTAISKSDTEKFYLRTLADEEEVLFD 118
Query: 416 VVAGEKGFEAAGVTGPGGEPVKGSPY 493
+V G+ G EAA VTGP G V GS Y
Sbjct: 119 LVDGKNGPEAANVTGPAGVNVSGSKY 144
>Z73424-7|CAA97783.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 84.2 bits (199), Expect = 1e-16
Identities = 46/90 (51%), Positives = 59/90 (65%), Gaps = 4/90 (4%)
Frame = +2
Query: 239 VIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVFVHQTAIARNNPRKA-VRSVGDGEAV 406
VI V G VKWF+V+ YGF+ R+ D ED FVHQTAI +++ K +R++ D E V
Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143
Query: 407 EFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 496
F +V G KG EAA VTGP GE V+GS +A
Sbjct: 144 VFDIVEGLKGPEAANVTGPDGENVRGSRFA 173
>AL023839-3|CAA19509.1| 294|Caenorhabditis elegans Hypothetical
protein Y39A1C.3 protein.
Length = 294
Score = 84.2 bits (199), Expect = 1e-16
Identities = 46/90 (51%), Positives = 59/90 (65%), Gaps = 4/90 (4%)
Frame = +2
Query: 239 VIAEKVSGTVKWFNVKSGYGFINRN---DTKEDVFVHQTAIARNNPRKA-VRSVGDGEAV 406
VI V G VKWF+V+ YGF+ R+ D ED FVHQTAI +++ K +R++ D E V
Sbjct: 84 VIETGVKGHVKWFSVRGRYGFVARDKPTDENEDFFVHQTAITKSSTIKFYLRTLDDDEPV 143
Query: 407 EFAVVAGEKGFEAAGVTGPGGEPVKGSPYA 496
F +V G KG EAA VTGP GE V+GS +A
Sbjct: 144 VFDIVEGLKGPEAANVTGPDGENVRGSRFA 173
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 55.6 bits (128), Expect = 4e-08
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +2
Query: 260 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 433
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 24 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 79
Query: 434 GFEAAGVTGP-GGEPVKGS 487
G EA V+G G+ +KGS
Sbjct: 80 GREAYAVSGEVEGQGLKGS 98
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 55.6 bits (128), Expect = 4e-08
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +2
Query: 260 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 433
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 434 GFEAAGVTGP-GGEPVKGS 487
G EA V+G G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 55.6 bits (128), Expect = 4e-08
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +2
Query: 260 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 433
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 434 GFEAAGVTGP-GGEPVKGS 487
G EA V+G G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 55.6 bits (128), Expect = 4e-08
Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +2
Query: 260 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVV--AGEK 433
G+ KWFNV GYGF+ + T ED+FVHQ+ N + RS+ +GE V + + + K
Sbjct: 55 GSCKWFNVSKGYGFVIDDITGEDLFVHQS----NLNMQGFRSLDEGERVSYYIQERSNGK 110
Query: 434 GFEAAGVTGP-GGEPVKGS 487
G EA V+G G+ +KGS
Sbjct: 111 GREAYAVSGEVEGQGLKGS 129
>U55364-5|AAQ23124.1| 368|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 31,
isoform b protein.
Length = 368
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 759 QFQPGQGGHNQAQRQNGQDGDAS-ATTSNQQ 848
Q Q GQ G NQ Q+ NGQ+ ++ TSNQQ
Sbjct: 288 QQQNGQNGQNQFQQSNGQNQNSQYQQTSNQQ 318
>U55364-4|AAA97972.1| 382|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 31,
isoform a protein.
Length = 382
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 759 QFQPGQGGHNQAQRQNGQDGDAS-ATTSNQQ 848
Q Q GQ G NQ Q+ NGQ+ ++ TSNQQ
Sbjct: 302 QQQNGQNGQNQFQQSNGQNQNSQYQQTSNQQ 332
>AC024214-13|AAM97984.1| 296|Caenorhabditis elegans Collagen
protein 106 protein.
Length = 296
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = +3
Query: 735 RVPPSASAQ-FQPGQGGHNQAQRQNGQDGDASATTSNQQQGA 857
R PP A Q + PG GH + G G A N +QGA
Sbjct: 194 RGPPGAKGQTYLPGSAGHPGNSGRRGPPGPPGANGKNGKQGA 235
>AL023493-2|CAD44137.1| 909|Caenorhabditis elegans Hypothetical
protein H20J18.1b protein.
Length = 909
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 750 ASAQFQPGQGGHNQAQRQNGQDGDASATTSNQQQGAKPKSNK 875
A Q Q Q QAQ+Q Q A QQQG +P++++
Sbjct: 171 ALQQLQAQQQAQQQAQQQAQQQAQQQAQQQAQQQGGQPQASQ 212
>AL023493-1|CAA18898.1| 947|Caenorhabditis elegans Hypothetical
protein H20J18.1a protein.
Length = 947
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 750 ASAQFQPGQGGHNQAQRQNGQDGDASATTSNQQQGAKPKSNK 875
A Q Q Q QAQ+Q Q A QQQG +P++++
Sbjct: 171 ALQQLQAQQQAQQQAQQQAQQQAQQQAQQQAQQQGGQPQASQ 212
>AF045645-6|AAC02608.1| 314|Caenorhabditis elegans Collagen protein
101 protein.
Length = 314
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = +3
Query: 750 ASAQFQPGQGGHNQAQRQNGQDGDASATTSNQQQGA 857
A A QPGQ GH Q Q G GDA A + Q G+
Sbjct: 252 AGAPGQPGQAGHAQ-PGQPGPQGDAGAPGAPGQPGS 286
>Z77666-12|CAJ43911.2| 896|Caenorhabditis elegans Hypothetical
protein K08E7.5c protein.
Length = 896
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +3
Query: 690 SRWTPWGRSWPNE*RRVPPSASAQFQPG--QGGHNQAQRQNGQD-GDASATTSNQQQGAK 860
S WT + + E ++VPPSA + P R++ +D G++ S + G K
Sbjct: 51 STWTGYDFYYEKEPKKVPPSAGSGKMPAFQSIASISTDRESPEDPGNSGYLASGAESGPK 110
Query: 861 PKSNKP 878
++KP
Sbjct: 111 KTTSKP 116
>Z77666-9|CAJ43912.1| 541|Caenorhabditis elegans Hypothetical
protein K08E7.5d protein.
Length = 541
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +3
Query: 690 SRWTPWGRSWPNE*RRVPPSASAQFQPG--QGGHNQAQRQNGQD-GDASATTSNQQQGAK 860
S WT + + E ++VPPSA + P R++ +D G++ S + G K
Sbjct: 10 STWTGYDFYYEKEPKKVPPSAGSGKMPAFQSIASISTDRESPEDPGNSGYLASGAESGPK 69
Query: 861 PKSNKP 878
++KP
Sbjct: 70 KTTSKP 75
>Z77666-8|CAJ43910.1| 493|Caenorhabditis elegans Hypothetical
protein K08E7.5b protein.
Length = 493
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +3
Query: 690 SRWTPWGRSWPNE*RRVPPSASAQFQPG--QGGHNQAQRQNGQD-GDASATTSNQQQGAK 860
S WT + + E ++VPPSA + P R++ +D G++ S + G K
Sbjct: 10 STWTGYDFYYEKEPKKVPPSAGSGKMPAFQSIASISTDRESPEDPGNSGYLASGAESGPK 69
Query: 861 PKSNKP 878
++KP
Sbjct: 70 KTTSKP 75
>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical
protein K08E7.5a protein.
Length = 1221
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = +3
Query: 690 SRWTPWGRSWPNE*RRVPPSASAQFQPG--QGGHNQAQRQNGQD-GDASATTSNQQQGAK 860
S WT + + E ++VPPSA + P R++ +D G++ S + G K
Sbjct: 10 STWTGYDFYYEKEPKKVPPSAGSGKMPAFQSIASISTDRESPEDPGNSGYLASGAESGPK 69
Query: 861 PKSNKP 878
++KP
Sbjct: 70 KTTSKP 75
>U28928-11|AAA68342.3| 824|Caenorhabditis elegans Hypothetical
protein C44B7.11 protein.
Length = 824
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 669 ALRWYNASFLTLISLVHPLGWAGV 598
ALRWY +L L++ P WAG+
Sbjct: 378 ALRWYTRHWLALVAYGLPSVWAGI 401
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,128,568
Number of Sequences: 27780
Number of extensions: 321618
Number of successful extensions: 1376
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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