Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_H12
         (884 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    25   0.70 
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    25   0.70 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   4.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   4.9  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +3

Query: 747 SASAQFQPGQGGHNQ-AQRQNGQDGDASATTSNQQQGAKPKSNKPVG 884
           +A  Q    Q   NQ A +QNG   + +    N+Q G +   NK  G
Sbjct: 436 NADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQNG 482



 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +3

Query: 777 GGHNQAQRQNGQDGDASATTSNQQQGAKPKSNKPVG 884
           G      +QNG   + +    N+Q G K   NK  G
Sbjct: 472 GNRQNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNG 507



 Score = 23.4 bits (48), Expect = 2.8
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = +3

Query: 777 GGHNQAQRQNGQDGDASATTSNQQQGAKPKSNKPVG 884
           G      +QNG   + +    N+Q G +   NK  G
Sbjct: 482 GNRQNDNKQNGNRQNGNKQNDNKQNGNRQNDNKRNG 517



 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/36 (27%), Positives = 14/36 (38%)
 Frame = +3

Query: 777 GGHNQAQRQNGQDGDASATTSNQQQGAKPKSNKPVG 884
           G      RQN    + +    N+Q G +   NK  G
Sbjct: 457 GNRQNDNRQNDNKQNGNRQNDNKQNGNRQNDNKQNG 492


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 392 DGEAVEFAVVAGEKGFEAAGVTGPGGEPV 478
           DG+ V    VA E GF+  G   P   P+
Sbjct: 81  DGQQVSITYVADENGFQVQGSHIPTAPPI 109


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = -2

Query: 868 LLGLAPCCWFDV 833
           ++G  PCCW+ +
Sbjct: 482 MIGYYPCCWWKI 493


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = -2

Query: 868 LLGLAPCCWFDV 833
           ++G  PCCW+ +
Sbjct: 535 MIGYYPCCWWKI 546


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,628
Number of Sequences: 438
Number of extensions: 3823
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)