Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_H11
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    30   0.52 
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    27   2.8  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    27   3.7  
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    27   3.7  
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    26   6.4  
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat...    26   8.5  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    26   8.5  

>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -1

Query: 782 KDKYCSFRFAVSNLMQAMNTTAPYFFASGSDSKNVLLILATTFPGISSTALNTLRTLSN 606
           +D + SF  + S +  A  + A    A  SD+     + +TTFP    +   T  TLSN
Sbjct: 183 EDPFASFNSSASAIAAASKSAAASASALSSDTGRSATMNSTTFPTAMKSQSTTKPTLSN 241


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +1

Query: 316  AAKHLGTSVELI--ASDVLDHYRTFALLERLLTVPSKLTEQMIFQ 444
            A + LG S E I  A DV++ YR  A+L  L+ +    T+  +F+
Sbjct: 1117 ADEELGWSAEQICLADDVINEYRRKAILCNLMALSLPFTQDKLFK 1161


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 223 SNYTLIDPEIYQLWIEGCSSSEAVSTLHQRGAAKH 327
           S YT++ P++ ++ ++      A  T H R +AKH
Sbjct: 503 SAYTMVPPDLDEICVDFVQKFGAWITYHHRRSAKH 537


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 616 VRRVFKAVEEMPGNVVANIRSTFLLSDPLAKKYGAVVF 729
           VR +F ++ ++  ++      TF  SDP  KKY A  F
Sbjct: 214 VRGLFYSISQLRDSMTYLYDYTFYFSDPSPKKYAADAF 251


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +1

Query: 397 RLLTVPSKLTEQMIFQLDEQTKHMLIEKYYDLDDAVIRELL 519
           RL+    + T  +  +L+      LI+KYY  D+++  ELL
Sbjct: 57  RLVYRSLRTTSNICHRLNADVLGQLIKKYYSFDNSLKNELL 97


>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
           phosphatidyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -1

Query: 260 NWYISGS-ISV*LLTNTSTSVYIFLLFVLTYLFFNFAFLFNRYLF*CI 120
           N  ISG+ +S    TN     Y+F    L   FF   FLF++  F CI
Sbjct: 157 NLIISGANLSRDYFTNRKDRYYLFSDKGLADFFFKTHFLFSQLSFECI 204


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 4/130 (3%)
 Frame = +1

Query: 406 TVPSKLTEQMIFQLDEQTKHMLIEKYYDLDDAVIRELLGRKLSSRHRKDLDEVAERSGAP 585
           ++ S+  E   F ++E     ++ +     D V  EL G          + EV   + AP
Sbjct: 388 SIQSRALELSTFLVNEANVRFMVRELLSFLDNVSDELRGSTAQY-----ITEVTN-AFAP 441

Query: 586 LRCCRRQFDNVRRVFKAVEEMPGNVVA-NIRSTFL---LSDPLAKKYGAVVFIACMRFET 753
            +  R  FD + RVFK+     GN V+ +  STFL    S P   +Y  V   A ++ + 
Sbjct: 442 NK--RWHFDTLLRVFKSA----GNFVSESTLSTFLRLIASAPELHEYAVVKLYAALKEDV 495

Query: 754 AKRKLQYLSF 783
           ++  L   +F
Sbjct: 496 SQEALTLSAF 505


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,580,339
Number of Sequences: 5004
Number of extensions: 72882
Number of successful extensions: 197
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)