Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_H11
         (905 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69791-6|CAL36514.1|  241|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z69791-5|CAL36513.1|  281|Caenorhabditis elegans Hypothetical pr...    30   2.0  
DQ118141-1|AAZ23152.1|  241|Caenorhabditis elegans hox cofactor ...    30   2.0  
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-...    30   2.6  
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    30   2.6  
Z83230-5|CAB05745.1|  304|Caenorhabditis elegans Hypothetical pr...    28   8.0  
AL023847-4|CAA19550.1|  349|Caenorhabditis elegans Hypothetical ...    28   8.0  

>Z69791-6|CAL36514.1|  241|Caenorhabditis elegans Hypothetical
           protein F39D8.2b protein.
          Length = 241

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
 Frame = +1

Query: 385 ALLERLLTVPSKLTEQMIFQLDEQTKHMLIEKYYDLDDA--VIRELLGRKLS-SRHRKDL 555
           AL E++ + P     +++ +  E        K ++ DD   + + L  R +  S +R ++
Sbjct: 22  ALFEKIASHPLMPIVELLLEKCETAATTFDRKAFETDDIKRLFQSLEQRGVQLSSNRDEV 81

Query: 556 DEVAERSGAPLRCCRRQFDNVRRVFKAVEEMPGNVVANIRST 681
           DE+ E +   LR C  + +   RV+  +E      +A +R T
Sbjct: 82  DELMETAILALRTCMVELE---RVYSLMESFKAKYLATLRRT 120


>Z69791-5|CAL36513.1|  281|Caenorhabditis elegans Hypothetical
           protein F39D8.2a protein.
          Length = 281

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
 Frame = +1

Query: 385 ALLERLLTVPSKLTEQMIFQLDEQTKHMLIEKYYDLDDA--VIRELLGRKLS-SRHRKDL 555
           AL E++ + P     +++ +  E        K ++ DD   + + L  R +  S +R ++
Sbjct: 62  ALFEKIASHPLMPIVELLLEKCETAATTFDRKAFETDDIKRLFQSLEQRGVQLSSNRDEV 121

Query: 556 DEVAERSGAPLRCCRRQFDNVRRVFKAVEEMPGNVVANIRST 681
           DE+ E +   LR C  + +   RV+  +E      +A +R T
Sbjct: 122 DELMETAILALRTCMVELE---RVYSLMESFKAKYLATLRRT 160


>DQ118141-1|AAZ23152.1|  241|Caenorhabditis elegans hox cofactor
           PSA-3 splice variantbeta protein.
          Length = 241

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
 Frame = +1

Query: 385 ALLERLLTVPSKLTEQMIFQLDEQTKHMLIEKYYDLDDA--VIRELLGRKLS-SRHRKDL 555
           AL E++ + P     +++ +  E        K ++ DD   + + L  R +  S +R ++
Sbjct: 22  ALFEKIASHPLMPIVELLLEKCETAATTFDRKAFETDDIKRLFQSLEQRGVQLSSNRDEV 81

Query: 556 DEVAERSGAPLRCCRRQFDNVRRVFKAVEEMPGNVVANIRST 681
           DE+ E +   LR C  + +   RV+  +E      +A +R T
Sbjct: 82  DELMETAILALRTCMVELE---RVYSLMESFKAKYLATLRRT 120


>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform b protein.
          Length = 1169

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 244 PEIYQLWIEGCSSSEAVSTLHQRGAAKHLGTSVEL 348
           PE Y L  +GC S E  +    RG A+H  T+  L
Sbjct: 752 PETYVLHHDGCVSPEEAARRKARGKARHEATTARL 786


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
           x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 244 PEIYQLWIEGCSSSEAVSTLHQRGAAKHLGTSVEL 348
           PE Y L  +GC S E  +    RG A+H  T+  L
Sbjct: 849 PETYVLHHDGCVSPEEAARRKARGKARHEATTARL 883


>Z83230-5|CAB05745.1|  304|Caenorhabditis elegans Hypothetical
           protein F56A8.5 protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 28  REFLKTLNCWIQIFFF-ANNKLQKLRLKSF 114
           REF+KTLN +++ F    NN    +RLK F
Sbjct: 36  REFIKTLNLYVEFFSVEINNNRCVIRLKFF 65


>AL023847-4|CAA19550.1|  349|Caenorhabditis elegans Hypothetical
           protein Y57A10C.8 protein.
          Length = 349

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 258 LVYFRIDQCIITNEYINFCVHFFVI 184
           +VY   D C +    ++FC++FF+I
Sbjct: 31  MVYLVTDVCCLVAAVLSFCINFFII 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,265,669
Number of Sequences: 27780
Number of extensions: 432048
Number of successful extensions: 1141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)