Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_H08
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    35   0.014
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    30   0.51 
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb...    27   2.7  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    26   8.3  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 35.1 bits (77), Expect = 0.014
 Identities = 24/72 (33%), Positives = 31/72 (43%)
 Frame = +3

Query: 195 TPRTNLPIALQSCKCSTSWPA*CTTKLSCAWL*CSTFIPTRV*SRTTTCSNVLPRNHAST 374
           TP T+ P+   +C  STS P   T   S  +   S+   T     TT C+      + ST
Sbjct: 484 TPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTST 543

Query: 375 NCTSRPCDTTWC 410
             TS P  TT C
Sbjct: 544 PVTSTPLATTNC 555



 Score = 29.5 bits (63), Expect = 0.67
 Identities = 21/64 (32%), Positives = 28/64 (43%)
 Frame = +3

Query: 195 TPRTNLPIALQSCKCSTSWPA*CTTKLSCAWL*CSTFIPTRV*SRTTTCSNVLPRNHAST 374
           TP T+ P+A  +C  STS P   T   S  +   S+   T     TT C+      + ST
Sbjct: 543 TPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTST 602

Query: 375 NCTS 386
             TS
Sbjct: 603 PITS 606



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 24/72 (33%), Positives = 30/72 (41%)
 Frame = +3

Query: 195 TPRTNLPIALQSCKCSTSWPA*CTTKLSCAWL*CSTFIPTRV*SRTTTCSNVLPRNHAST 374
           TP T+ P+A  +C  STS P              ST + T     TT C+      + ST
Sbjct: 438 TPVTSTPLATTNCTTSTSVPY------------TSTPV-TSTPLTTTNCTTSTSIPYTST 484

Query: 375 NCTSRPCDTTWC 410
             TS P  TT C
Sbjct: 485 PVTSTPLTTTNC 496


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 348 HCCRLLSETIPGLE*MLNIITRHRIIWWYIRLAR 247
           +C RLL+  IP L   L++   H+  WW +R  R
Sbjct: 96  NCIRLLTRIIPFLNEKLDLEEWHQKFWWSLRKKR 129


>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 378 SWCWRDSWVRHCCRLLSE 325
           SW W D ++  CCR LS+
Sbjct: 114 SWRWYDQYMLDCCRSLSD 131


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 460 YHSSGLVSHKDSFDNQMHHVVSH 392
           +    L+SHK+ F+  M H V H
Sbjct: 40  FQKKDLISHKNDFERTMRHDVLH 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,712,365
Number of Sequences: 5004
Number of extensions: 81483
Number of successful extensions: 184
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)