Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_H08
(891 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0647 + 23910318-23910694,23911732-23911867,23912067-239122... 33 0.40
01_01_0185 - 1570942-1571178,1571525-1571656,1571737-1571816,157... 31 1.6
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 30 2.8
01_01_0082 + 625198-625719 30 2.8
10_08_0683 - 19860777-19861070,19861677-19861874,19862498-198626... 29 3.8
03_06_0238 - 32570222-32570330,32570538-32570599,32570658-325708... 29 6.6
12_02_0761 - 22901121-22901917,22902111-22902707,22904282-229043... 28 8.7
02_04_0610 + 24335153-24337724,24337835-24338256 28 8.7
>01_05_0647 +
23910318-23910694,23911732-23911867,23912067-23912277,
23912357-23912724,23913793-23914081,23914173-23914372,
23914452-23914646
Length = 591
Score = 32.7 bits (71), Expect = 0.40
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +1
Query: 367 PAPTAPRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTP 489
P PT P + P A Y YPY P+Q W P+TP
Sbjct: 75 PPPTTP-AYSLPPPAQPYGQYPYPYPSQGQAGAAYWPPSTP 114
>01_01_0185 -
1570942-1571178,1571525-1571656,1571737-1571816,
1571919-1572048,1572136-1572268,1572376-1572497,
1572612-1572749,1572898-1572918,1573493-1573678,
1574576-1574713,1575068-1575532
Length = 593
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +1
Query: 532 YEGHDGSPL--WVIRSQFQGDLIPGKLCVKHF 621
Y G + P+ WVI QGDL+ G C HF
Sbjct: 301 YLGQEKLPIIVWVIAQASQGDLVTGMFCWAHF 332
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 29.9 bits (64), Expect = 2.8
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +1
Query: 313 PGYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVT-PTQSYDTTIEWVPTTP 489
PG P P P+P++ TP G GY P T P+ S DT+ PTTP
Sbjct: 143 PGGGCSSSPTPCDAP---PSPSSDTSPTTPGGGGGYSPTPSDTPPSPSSDTS----PTTP 195
Score = 29.1 bits (62), Expect = 5.0
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +1
Query: 313 PGYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPY-VTPTQSYDTTIEWVPTTP 489
PG G P P P+P++ TP G GY P P+ S DT+ PTTP
Sbjct: 169 PGGGGGYSPTPSDTP---PSPSSDTSPTTPGGGGGYTPTPSDAPPSPSSDTS----PTTP 221
Score = 28.7 bits (61), Expect = 6.6
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +1
Query: 313 PGYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPY-VTPTQSYDTTIEWVPTTP 489
PG G P P P+P++ TP G GY P P+ S DT+ PTTP
Sbjct: 195 PGGGGGYTPTPSDAP---PSPSSDTSPTTPGGGGGYTPTPSDAPPSPSSDTS----PTTP 247
>01_01_0082 + 625198-625719
Length = 173
Score = 29.9 bits (64), Expect = 2.8
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Frame = +1
Query: 313 PGYSLGQQPAAMSYPG-ITPAPTAPRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTP 489
P Y P ++YP TP+ P P+G GY P PT Y+ T T P
Sbjct: 70 PVYYPPPSPPPVAYPPPTTPSTNCPP---PPYGGGGYNPTPSYNPTPGYNPTPSGWFTPP 126
Query: 490 QNASILS 510
S L+
Sbjct: 127 NMPSYLT 133
>10_08_0683 -
19860777-19861070,19861677-19861874,19862498-19862659,
19862763-19862911,19863089-19863236,19863317-19863385,
19863471-19863719,19863937-19864131,19864444-19864560,
19864978-19866537
Length = 1046
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = +1
Query: 301 HSFQPGYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVTP 444
H + P S PAA S P + P + G + HG G Q PY P
Sbjct: 158 HDYPPPPSPAAVPAASS-PSVLPPSASFPGGGSSHGGGGMQMVPYGPP 204
>03_06_0238 -
32570222-32570330,32570538-32570599,32570658-32570883,
32571165-32571532,32571644-32571743,32571817-32571879,
32573077-32573123,32573222-32573353
Length = 368
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/65 (24%), Positives = 26/65 (40%)
Frame = -1
Query: 465 CCIIALGWCHIRIALITKCTMWCHMAARCSWCWRDSWVRHCCRLLSETIPGLE*MLNIIT 286
C I +C + +T C H+ WC R S C + +S P + +L +
Sbjct: 30 CSICLEAFCDNDPSTVTSCKHEYHLQCILEWCQRSSQCPMCWQPISMKDPMSQELLEAVE 89
Query: 285 RHRII 271
+ R I
Sbjct: 90 QERNI 94
>12_02_0761 -
22901121-22901917,22902111-22902707,22904282-22904358,
22906543-22907135,22907552-22908118,22908431-22908958,
22909115-22909432,22910622-22910656,22910986-22911301
Length = 1275
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 340 AAMSYPGITPAPTAPRGHVTPHGA 411
+A S P TP P AP H+ PHG+
Sbjct: 41 SAPSPPHRTPEPVAPVWHLRPHGS 64
>02_04_0610 + 24335153-24337724,24337835-24338256
Length = 997
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -2
Query: 788 PANIQRFTSCSVPPITA--LGGITPSRLSNHLT 696
PA++ +S + + A LGGI PS + NHLT
Sbjct: 228 PASLFNLSSLRILELRANLLGGILPSNMGNHLT 260
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,844,666
Number of Sequences: 37544
Number of extensions: 607298
Number of successful extensions: 1637
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1635
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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