Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_H08
         (891 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032648-3|CAA21695.1|  319|Caenorhabditis elegans Hypothetical ...    30   2.6  
Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical pr...    29   5.9  
U41031-3|AAA82620.1|  164|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AL032648-3|CAA21695.1|  319|Caenorhabditis elegans Hypothetical
           protein Y54G9A.4 protein.
          Length = 319

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -2

Query: 746 ITALGGITPSRLSNHL--TLSGRAQHTSMF*TAFSFPPHGTYAEKCFTHNLPGIRSPW 579
           +T + G+ P ++ ++L  T S   QH+S+  + FS    G +   CF   LP     W
Sbjct: 17  MTIIFGLLPIKVISYLNTTKSAIHQHSSLILSLFSCFAGGVFLSVCFLDMLPDCLEAW 74


>Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical
           protein DY3.5 protein.
          Length = 796

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 17/51 (33%), Positives = 23/51 (45%)
 Frame = +1

Query: 367 PAPTAPRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTPQNASILSEKA 519
           P PT P   + P  +   +S P  +PT    T     P TPQN ++ S  A
Sbjct: 621 PPPTRPASVIAPSSSVVPKSQPRPSPTTRPPTRATIRP-TPQNKAVTSRPA 670


>U41031-3|AAA82620.1|  164|Caenorhabditis elegans Hypothetical
           protein C16B8.3 protein.
          Length = 164

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 22/80 (27%), Positives = 25/80 (31%)
 Frame = +1

Query: 316 GYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTPQN 495
           G  +G  P      G T AP  P G        GY       PTQ Y    +  P  PQ 
Sbjct: 45  GAGVGYAPPPPRPYGATYAPPPPMGIGAGVNPSGYVQQAPPLPTQGYSAYNQQPPPLPQQ 104

Query: 496 ASILSEKAVVAGYEGHDGSP 555
               +      GY    G P
Sbjct: 105 PYQTNMYPSNPGYSSTPGYP 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,176,614
Number of Sequences: 27780
Number of extensions: 491563
Number of successful extensions: 1426
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1426
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)