Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_H07
         (937 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.025
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    31   0.31 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 34.3 bits (75), Expect = 0.025
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -3

Query: 506 PPPPXRGPXVXGGGTXXAPXXPPPFXRGLARFFXP 402
           PPPP   P V G G    P  PP    G +R++ P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795



 Score = 29.1 bits (62), Expect = 0.94
 Identities = 19/48 (39%), Positives = 19/48 (39%)
 Frame = -2

Query: 513 PXPPPXRPGAXXXWGGNXKXXPXPXPLXPGXGPXF*XXEXPPPPPPXP 370
           P P P  P A    G      P P P   G GP       PPPPPP P
Sbjct: 746 PAPIPVPPPAPIMGG---PPPPPPPPGVAGAGP-------PPPPPPPP 783



 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -3

Query: 533 PXGGAXXXXPPPPXRGPXVXGGGT 462
           P G A    PPPP   P V  GG+
Sbjct: 767 PPGVAGAGPPPPPPPPPAVSAGGS 790


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 18/46 (39%), Positives = 18/46 (39%)
 Frame = +2

Query: 377 GGGGGGFSXX*KXGPXPGXRGXGXGXXFXFPPQXXXAPGRXGGGXG 514
           GGG GGF      GP PG  G G    F          G  GGG G
Sbjct: 187 GGGFGGFGGG-SGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPG 231



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 21/65 (32%), Positives = 21/65 (32%), Gaps = 1/65 (1%)
 Frame = +2

Query: 371 GXGGGGGGFSXX*KXGPXPGXRGXGXGXXFXFPPQXXXAPGRXGGG-XGIXXPQXGXXGY 547
           G  GG GGF          G  G G G     P      PG  GGG  G      G  G 
Sbjct: 205 GGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264

Query: 548 PXXRG 562
           P   G
Sbjct: 265 PGGHG 269


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -2

Query: 450 PXPXPLXPGXGPXF*XXEXPPPPPP 376
           P P P  PG  P     + PPPPPP
Sbjct: 9   PPPPPPPPGFEPP---SQPPPPPPP 30



 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 861 PPPGXXPPXXXXXPPP 908
           PPPG  PP     PPP
Sbjct: 14  PPPGFEPPSQPPPPPP 29


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 17/52 (32%), Positives = 18/52 (34%), Gaps = 6/52 (11%)
 Frame = -2

Query: 513 PXPPPXRPGAXXXWGGNXKXXPXPXPL------XPGXGPXF*XXEXPPPPPP 376
           P PPP    +      N K  P P P        P  G        PPPPPP
Sbjct: 291 PLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,876,891
Number of Sequences: 5004
Number of extensions: 23052
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 475330268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)