Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_H05
         (897 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...   139   4e-34
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    31   0.29 
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    29   0.90 
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    27   3.6  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    27   4.8  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   8.4  

>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score =  139 bits (337), Expect = 4e-34
 Identities = 83/234 (35%), Positives = 127/234 (54%), Gaps = 1/234 (0%)
 Frame = +2

Query: 179 YHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFY 358
           +H  +   ATLK I  RLKS+KNI+KIT+++K V+  K TRA+R ++A+  Y   + + +
Sbjct: 24  FHASSPCEATLKEIEQRLKSIKNIEKITKTIKTVAQTKLTRAQRAMEASNKYYRVSDEVF 83

Query: 359 ERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGA-ENIKVICVGDKSR 535
           + A    PE+  K L VA +SD+GLCG +H+ +S++IR  L +P   EN  +  +G+K R
Sbjct: 84  KEAGTKAPEEG-KTLMVACSSDKGLCGGIHSSISRLIRRELHDPKTFENTSLCILGEKVR 142

Query: 536 GILQRLYGKHIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQ 715
             L R   +        IG   P+F +A Q+++ IL    ++    ++YNKF S VS+  
Sbjct: 143 TQLLRFCPESFYLTFAHIGGASPSFEEALQISSNILEHAKDYDRIVLVYNKFASAVSFET 202

Query: 716 SDLPLYTKKSIESASKLTAYDSLDSDVLQSYTEFXXXXXXXXXXKXGACSXQSS 877
               LYT K+I  +  L+AY+  D +V Q   EF              CS  SS
Sbjct: 203 VMKNLYTTKAINESPNLSAYEVSD-EVHQPLMEFAFANAIFSAMAEAHCSEMSS 255


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
 Frame = +2

Query: 377 PPEDD-PKQLFVAMTSDR----GLCGAVHTGVSKVIRNRLSEPGAENIKVICVGDKSRGI 541
           PPED  P++L   +T+      G+ GA+ TGV    +N L E GA ++ +IC       +
Sbjct: 70  PPEDGKPQKLKRTLTARHIQMIGIGGAIGTGVWVGSKNTLREGGAASV-LICYSLVGSMV 128

Query: 542 LQRLYGKHIISVA 580
           L  +Y    ++VA
Sbjct: 129 LMTVYSLGELAVA 141


>SPAC18G6.05c |||translation elongation regulator Gcn1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +2

Query: 620  SQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTAYDSLDSDVL 799
            S+ +  IL +  +FGS KII  K   +V    S   L  + +I     L    +L +D+ 
Sbjct: 2456 SEFSVLILNAAVKFGSQKIIELKLSDIVCSIISTASLQKEVTIAENGILALGKALLADIP 2515

Query: 800  QSY 808
            QS+
Sbjct: 2516 QSF 2518


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 728 GASRTGRTIPQT*TCYK*SFRNQTRILR*EWQW 630
           GAS+T    P + +C    F N+   L+ EW W
Sbjct: 45  GASKTKHGRPWSISCLVYGFPNKVSALKFEWNW 77


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = -3

Query: 628 QLTCVQESRWETSNLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFRY 455
           +L  + ES+++T+    +T     +  + D  R+I   D  D +    +ET+A  F+Y
Sbjct: 425 KLWYLNESKFDTNPPPRSTMSCRKLSGIDDPFRYIVFNDIQDFIVCFESETIAFAFKY 482


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 410 AMTSDRGLCGAVHTGVSKVIRNRLSE 487
           A+ SD  +C  V TG+S   ++RLS+
Sbjct: 191 AVLSDDSICEIVETGLSMCCQSRLSQ 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,706,221
Number of Sequences: 5004
Number of extensions: 81894
Number of successful extensions: 232
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)