Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_H05
         (897 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113454-1|AAM29459.1|  297|Drosophila melanogaster RE35715p pro...   310   2e-84
AE014297-4433|AAN14186.1|  297|Drosophila melanogaster CG7610-PC...   310   2e-84
AE014297-4432|AAF56932.1|  297|Drosophila melanogaster CG7610-PB...   310   2e-84
AE014297-4431|AAN14185.1|  297|Drosophila melanogaster CG7610-PA...   310   2e-84
Y12701-1|CAA73233.1|  169|Drosophila melanogaster ATP synthase, ...   223   2e-58
AE014297-4235|AAF56793.2| 5106|Drosophila melanogaster CG1842-PA...    29   6.5  

>AY113454-1|AAM29459.1|  297|Drosophila melanogaster RE35715p
           protein.
          Length = 297

 Score =  310 bits (761), Expect = 2e-84
 Identities = 152/237 (64%), Positives = 184/237 (77%), Gaps = 1/237 (0%)
 Frame = +2

Query: 170 AVVYHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAV 349
           A +  Q  R MATLK ISIRLKSVKNIQKITQSMKMVSAAKY RAERDLKAARPYG GA 
Sbjct: 16  ATMLAQQQRGMATLKMISIRLKSVKNIQKITQSMKMVSAAKYARAERDLKAARPYGIGAQ 75

Query: 350 QFYERAEVTPPED-DPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIKVICVGD 526
           QF+E+ E+ P E  +PK+L +A+TSDRGLCGAVHTGV+++IR  L++  A N KV CVGD
Sbjct: 76  QFFEKTEIQPDEKAEPKKLLIAVTSDRGLCGAVHTGVARLIRGELAQDEA-NTKVFCVGD 134

Query: 527 KSRGILQRLYGKHIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVS 706
           KSR IL RLYGK+I+ VANE+GRLPPTFLDAS++A  +L +GY++  GKI+YN+FKSVVS
Sbjct: 135 KSRAILSRLYGKNILMVANEVGRLPPTFLDASKIANEVLQTGYDYTEGKIVYNRFKSVVS 194

Query: 707 YAQSDLPLYTKKSIESASKLTAYDSLDSDVLQSYTEFXXXXXXXXXXKXGACSXQSS 877
           Y  S LP+++  ++E + KL  YDSLDSDV++SY EF          K GACS QSS
Sbjct: 195 YQCSTLPIFSGSTVEKSEKLAVYDSLDSDVVKSYLEFSLASLIFYTMKEGACSEQSS 251


>AE014297-4433|AAN14186.1|  297|Drosophila melanogaster CG7610-PC,
           isoform C protein.
          Length = 297

 Score =  310 bits (761), Expect = 2e-84
 Identities = 152/237 (64%), Positives = 184/237 (77%), Gaps = 1/237 (0%)
 Frame = +2

Query: 170 AVVYHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAV 349
           A +  Q  R MATLK ISIRLKSVKNIQKITQSMKMVSAAKY RAERDLKAARPYG GA 
Sbjct: 16  ATMLAQQQRGMATLKMISIRLKSVKNIQKITQSMKMVSAAKYARAERDLKAARPYGIGAQ 75

Query: 350 QFYERAEVTPPED-DPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIKVICVGD 526
           QF+E+ E+ P E  +PK+L +A+TSDRGLCGAVHTGV+++IR  L++  A N KV CVGD
Sbjct: 76  QFFEKTEIQPDEKAEPKKLLIAVTSDRGLCGAVHTGVARLIRGELAQDEA-NTKVFCVGD 134

Query: 527 KSRGILQRLYGKHIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVS 706
           KSR IL RLYGK+I+ VANE+GRLPPTFLDAS++A  +L +GY++  GKI+YN+FKSVVS
Sbjct: 135 KSRAILSRLYGKNILMVANEVGRLPPTFLDASKIANEVLQTGYDYTEGKIVYNRFKSVVS 194

Query: 707 YAQSDLPLYTKKSIESASKLTAYDSLDSDVLQSYTEFXXXXXXXXXXKXGACSXQSS 877
           Y  S LP+++  ++E + KL  YDSLDSDV++SY EF          K GACS QSS
Sbjct: 195 YQCSTLPIFSGSTVEKSEKLAVYDSLDSDVVKSYLEFSLASLIFYTMKEGACSEQSS 251


>AE014297-4432|AAF56932.1|  297|Drosophila melanogaster CG7610-PB,
           isoform B protein.
          Length = 297

 Score =  310 bits (761), Expect = 2e-84
 Identities = 152/237 (64%), Positives = 184/237 (77%), Gaps = 1/237 (0%)
 Frame = +2

Query: 170 AVVYHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAV 349
           A +  Q  R MATLK ISIRLKSVKNIQKITQSMKMVSAAKY RAERDLKAARPYG GA 
Sbjct: 16  ATMLAQQQRGMATLKMISIRLKSVKNIQKITQSMKMVSAAKYARAERDLKAARPYGIGAQ 75

Query: 350 QFYERAEVTPPED-DPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIKVICVGD 526
           QF+E+ E+ P E  +PK+L +A+TSDRGLCGAVHTGV+++IR  L++  A N KV CVGD
Sbjct: 76  QFFEKTEIQPDEKAEPKKLLIAVTSDRGLCGAVHTGVARLIRGELAQDEA-NTKVFCVGD 134

Query: 527 KSRGILQRLYGKHIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVS 706
           KSR IL RLYGK+I+ VANE+GRLPPTFLDAS++A  +L +GY++  GKI+YN+FKSVVS
Sbjct: 135 KSRAILSRLYGKNILMVANEVGRLPPTFLDASKIANEVLQTGYDYTEGKIVYNRFKSVVS 194

Query: 707 YAQSDLPLYTKKSIESASKLTAYDSLDSDVLQSYTEFXXXXXXXXXXKXGACSXQSS 877
           Y  S LP+++  ++E + KL  YDSLDSDV++SY EF          K GACS QSS
Sbjct: 195 YQCSTLPIFSGSTVEKSEKLAVYDSLDSDVVKSYLEFSLASLIFYTMKEGACSEQSS 251


>AE014297-4431|AAN14185.1|  297|Drosophila melanogaster CG7610-PA,
           isoform A protein.
          Length = 297

 Score =  310 bits (761), Expect = 2e-84
 Identities = 152/237 (64%), Positives = 184/237 (77%), Gaps = 1/237 (0%)
 Frame = +2

Query: 170 AVVYHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAV 349
           A +  Q  R MATLK ISIRLKSVKNIQKITQSMKMVSAAKY RAERDLKAARPYG GA 
Sbjct: 16  ATMLAQQQRGMATLKMISIRLKSVKNIQKITQSMKMVSAAKYARAERDLKAARPYGIGAQ 75

Query: 350 QFYERAEVTPPED-DPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIKVICVGD 526
           QF+E+ E+ P E  +PK+L +A+TSDRGLCGAVHTGV+++IR  L++  A N KV CVGD
Sbjct: 76  QFFEKTEIQPDEKAEPKKLLIAVTSDRGLCGAVHTGVARLIRGELAQDEA-NTKVFCVGD 134

Query: 527 KSRGILQRLYGKHIISVANEIGRLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVS 706
           KSR IL RLYGK+I+ VANE+GRLPPTFLDAS++A  +L +GY++  GKI+YN+FKSVVS
Sbjct: 135 KSRAILSRLYGKNILMVANEVGRLPPTFLDASKIANEVLQTGYDYTEGKIVYNRFKSVVS 194

Query: 707 YAQSDLPLYTKKSIESASKLTAYDSLDSDVLQSYTEFXXXXXXXXXXKXGACSXQSS 877
           Y  S LP+++  ++E + KL  YDSLDSDV++SY EF          K GACS QSS
Sbjct: 195 YQCSTLPIFSGSTVEKSEKLAVYDSLDSDVVKSYLEFSLASLIFYTMKEGACSEQSS 251


>Y12701-1|CAA73233.1|  169|Drosophila melanogaster ATP synthase,
           gamma subunit protein.
          Length = 169

 Score =  223 bits (546), Expect = 2e-58
 Identities = 111/155 (71%), Positives = 129/155 (83%), Gaps = 1/155 (0%)
 Frame = +2

Query: 170 AVVYHQPNRNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAV 349
           A +  Q  R MATLK ISIRLKSVKNIQKITQSMKMVSAAKY RAERDLKAARPYG GA 
Sbjct: 16  ATMLAQQQRGMATLKMISIRLKSVKNIQKITQSMKMVSAAKYARAERDLKAARPYGIGAQ 75

Query: 350 QFYERAEVTPPED-DPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLSEPGAENIKVICVGD 526
           QF+E+ E+ P E  +PK+L +A+TSDRGLCGAVHTGV+++IR  L++  A N KV CVGD
Sbjct: 76  QFFEKTEIQPDEKAEPKKLLIAVTSDRGLCGAVHTGVARLIRGELAQDEA-NTKVFCVGD 134

Query: 527 KSRGILQRLYGKHIISVANEIGRLPPTFLDASQLA 631
           KSR IL RLYGK+I+ VANE+GRLPPTFLDAS++A
Sbjct: 135 KSRAILSRLYGKNILMVANEVGRLPPTFLDASKIA 169


>AE014297-4235|AAF56793.2| 5106|Drosophila melanogaster CG1842-PA
            protein.
          Length = 5106

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 81   SSTGKFYR*TPIKFAKCWDASDRVWAPKSWRW 176
            +S G+F +  P  +   WD  D VW  K+W W
Sbjct: 2990 ASGGQFPQSKPTLYDYFWDVKDNVW--KAWEW 3019


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,582,340
Number of Sequences: 53049
Number of extensions: 996580
Number of successful extensions: 2740
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2730
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4362070239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)