Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_H05
         (897 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   3.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   3.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   5.0  
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    23   5.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   8.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   8.7  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 139 LRTGCGHPSRGGGLPSAKQ 195
           L + C  PSRG  +PS+++
Sbjct: 12  LLSSCTRPSRGNAVPSSQR 30


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 139 LRTGCGHPSRGGGLPSAKQ 195
           L + C  PSRG  +PS+++
Sbjct: 12  LLSSCTRPSRGNAVPSSQR 30


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 642 SPQDTSLVPERSFITSSSLWYRTPSPTCPSTLRSLLRAPA 761
           SP  TS +  R +  + +L    PSP  PST   +L+ P+
Sbjct: 417 SPDRTSPMEYRLY--NPALIQSQPSPQYPSTSSHILQQPS 454


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 567 MCFPYNLCRIPRDLSPTQITL 505
           M  PY++ ++P  LSP   T+
Sbjct: 1   MSSPYHVAQLPHHLSPNMPTM 21


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = -3

Query: 151 TRSEASQHFANFMGVYR*NLPVDEKMSLADKFLGQXLKECPI 26
           T  E +  F +    Y     + E   LA  F+G  +K+C I
Sbjct: 390 TLQETADAFKDLQDKYYEEYKMYELGELASSFVGPKVKDCLI 431


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = -3

Query: 460  RYTSVYSSAQTSVRGHSNKQLLGVIFGRCNLSPFIELYCTFTIGTSS 320
            RY++  SSA T+    S    + +    C+ +  ++ + T TI  S+
Sbjct: 921  RYSTTKSSAVTATNASSMIAPVALTAATCDQNKAVKKHITTTIDCST 967


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,249
Number of Sequences: 438
Number of extensions: 5758
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)