Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_H04
         (907 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0319 - 27872601-27874457                                         29   3.8  
02_02_0280 - 8515894-8517309                                           29   6.7  

>02_05_0319 - 27872601-27874457
          Length = 618

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 21/78 (26%), Positives = 35/78 (44%)
 Frame = +3

Query: 174 SSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALNKNQIPKTNVH 353
           +S+ A   P   LPT A+   + L R  TN+ SS +  S  S+   +A +  Q+      
Sbjct: 204 NSVTAASSPSLPLPT-AVNSTALLARSPTNSSSSTASSSASSSPPISAASSRQLLSEAAA 262

Query: 354 SGGDGCLLLERTTLSGIQ 407
           +  DG      + LS ++
Sbjct: 263 AVADGNHTAAASLLSALK 280


>02_02_0280 - 8515894-8517309
          Length = 471

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 237 STLTRKTTNALSSQSVGSGGSAKRKTALNKNQIPKTNVHSGGDG 368
           + + +KT++ ++    G+G +  R     KN    T + SGG G
Sbjct: 379 AAMAQKTSDTIAQAGHGAGEAKNRAAESGKNSSATTTIGSGGGG 422


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,304,487
Number of Sequences: 37544
Number of extensions: 217133
Number of successful extensions: 444
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)