Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_H04
         (907 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC034019-1|AAH34019.1|  373|Homo sapiens LIM domain binding 2 pr...    31   4.3  
AK127255-1|BAC86902.1| 1007|Homo sapiens protein ( Homo sapiens ...    31   4.3  
AF068651-1|AAC77817.1|  373|Homo sapiens LIM-domain binding fact...    31   4.3  
AF064492-1|AAC28342.1|  373|Homo sapiens LIM homeobox protein co...    31   4.3  
AF047337-1|AAC83552.1|  373|Homo sapiens LIM homeobox protein co...    31   4.3  
AC002398-4|AAB81198.1|  903|Homo sapiens F25965_3 protein.             31   4.3  
AF064493-1|AAC28343.1|  331|Homo sapiens LIM homeobox protein co...    31   5.7  
AF052389-1|AAC13274.1|  347|Homo sapiens LIM domain binding prot...    31   7.6  

>BC034019-1|AAH34019.1|  373|Homo sapiens LIM domain binding 2
           protein.
          Length = 373

 Score = 31.5 bits (68), Expect = 4.3
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
 Frame = +3

Query: 156 CLLLLXSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALN---K 326
           CL      + A        PT   R R   T  T+N+ +  +  S GS K+ TA N    
Sbjct: 234 CLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLS 293

Query: 327 NQIPKTNV 350
           +Q+P   V
Sbjct: 294 SQVPDVMV 301


>AK127255-1|BAC86902.1| 1007|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45322 fis, clone BRHIP3006294, moderately
           similar to Mus musculus Cdc42 GTPase-activating protein
           (Cdgap). ).
          Length = 1007

 Score = 31.5 bits (68), Expect = 4.3
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 92  LHIADRMSQIAEEQKLEESDGLPPAS 169
           L +A+R  Q+AE+Q  +E  G PPAS
Sbjct: 766 LALAERAQQVAEQQSQQECGGTPPAS 791


>AF068651-1|AAC77817.1|  373|Homo sapiens LIM-domain binding factor
           CLIM1 protein.
          Length = 373

 Score = 31.5 bits (68), Expect = 4.3
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
 Frame = +3

Query: 156 CLLLLXSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALN---K 326
           CL      + A        PT   R R   T  T+N+ +  +  S GS K+ TA N    
Sbjct: 234 CLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLS 293

Query: 327 NQIPKTNV 350
           +Q+P   V
Sbjct: 294 SQVPDVMV 301


>AF064492-1|AAC28342.1|  373|Homo sapiens LIM homeobox protein
           cofactor protein.
          Length = 373

 Score = 31.5 bits (68), Expect = 4.3
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
 Frame = +3

Query: 156 CLLLLXSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALN---K 326
           CL      + A        PT   R R   T  T+N+ +  +  S GS K+ TA N    
Sbjct: 234 CLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLS 293

Query: 327 NQIPKTNV 350
           +Q+P   V
Sbjct: 294 SQVPDVMV 301


>AF047337-1|AAC83552.1|  373|Homo sapiens LIM homeobox protein
           cofactor protein.
          Length = 373

 Score = 31.5 bits (68), Expect = 4.3
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
 Frame = +3

Query: 156 CLLLLXSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALN---K 326
           CL      + A        PT   R R   T  T+N+ +  +  S GS K+ TA N    
Sbjct: 234 CLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLS 293

Query: 327 NQIPKTNV 350
           +Q+P   V
Sbjct: 294 SQVPDVMV 301


>AC002398-4|AAB81198.1|  903|Homo sapiens F25965_3 protein.
          Length = 903

 Score = 31.5 bits (68), Expect = 4.3
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +2

Query: 92  LHIADRMSQIAEEQKLEESDGLPPAS 169
           L +A+R  Q+AE+Q  +E  G PPAS
Sbjct: 518 LALAERAQQVAEQQSQQECGGTPPAS 543


>AF064493-1|AAC28343.1|  331|Homo sapiens LIM homeobox protein
           cofactor protein.
          Length = 331

 Score = 31.1 bits (67), Expect = 5.7
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
 Frame = +3

Query: 156 CLLLLXSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALN---K 326
           CL      + A        PT   R R   T  T+N+ +  +  S GS K+ TA N    
Sbjct: 234 CLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAANLSLS 293

Query: 327 NQIP 338
           +Q+P
Sbjct: 294 SQVP 297


>AF052389-1|AAC13274.1|  347|Homo sapiens LIM domain binding protein
           protein.
          Length = 347

 Score = 30.7 bits (66), Expect = 7.6
 Identities = 17/56 (30%), Positives = 23/56 (41%)
 Frame = +3

Query: 156 CLLLLXSSIAAQEKPREELPTRALRPRSTLTRKTTNALSSQSVGSGGSAKRKTALN 323
           CL      + A        PT   R R   T  T+N+ +  +  S GS K+ TA N
Sbjct: 210 CLFQKWQRMVAPPAEPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKKKTTAAN 265


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,162,570
Number of Sequences: 237096
Number of extensions: 1162913
Number of successful extensions: 1919
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1916
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11714809042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)