Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_H03
         (952 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.24 
SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb...    26   9.0  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.24
 Identities = 19/58 (32%), Positives = 23/58 (39%)
 Frame = +1

Query: 667 PDRDYKDTSRXPPWXXSPRCXSSCXRPLPGLPGIPCSALFSPFGGKRXGAFXSXXSPP 840
           P R    T R PP   S R  S+   P P +PG    AL  P G     +     +PP
Sbjct: 365 PPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPAL-PPLGNASRTSTPPVPTPP 421


>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 25.8 bits (54), Expect = 9.0
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 535 EHVSKRPAKGQEP*KG-RXCWRFSIGLRPPDEHHKNRRSSQ 654
           ++V K P    EP K  R C   + GLR  +EH  ++ S+Q
Sbjct: 177 DNVLKVPECKPEPGKKKRACKNCTCGLREMEEHESSKTSAQ 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,078,897
Number of Sequences: 5004
Number of extensions: 53099
Number of successful extensions: 128
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)