Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_H03
         (952 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172...    33   0.25 
01_04_0020 + 15142402-15143421                                         29   7.2  
10_08_0940 - 21708557-21708733,21709058-21709142,21709330-217095...    28   9.5  

>11_08_0081 -
           28216179-28216381,28216590-28216657,28217131-28217298,
           28217370-28217436,28217509-28217576,28218256-28218420,
           28218490-28218556,28218629-28218696,28219855-28219992,
           28220189-28220353,28221227-28221304,28221380-28221532,
           28222753-28222823,28223077-28223203,28223306-28223565,
           28223679-28223842,28224287-28224450,28225873-28226159
          Length = 826

 Score = 33.5 bits (73), Expect = 0.25
 Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
 Frame = +1

Query: 556 AKGQEP*KGRXCWRFSIGLRPPDEHHKNRRSSQRWRXPDRDYKDTSRX--PPWXXSPRCX 729
           A+   P +   C   S G +P     K +R S   +  DR Y D  R   PP   S R  
Sbjct: 489 ARHNSPQRKEECRTNSPG-QPKGHDEKRKRRSYTPKYKDRQYADIGRDETPPAPDSERPW 547

Query: 730 SSCXRPLPGLPGIPCSALFS 789
           + C  P P  PG   S  +S
Sbjct: 548 ALCRSPRPSPPGQSHSRSYS 567


>01_04_0020 + 15142402-15143421
          Length = 339

 Score = 28.7 bits (61), Expect = 7.2
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = +2

Query: 881 PPXWAXVXKPPVXPXGAPY 937
           PP  A V  PPV P GAPY
Sbjct: 233 PPSNAVVAHPPVVPYGAPY 251


>10_08_0940 -
           21708557-21708733,21709058-21709142,21709330-21709551,
           21710640-21710815,21711883-21711946,21712433-21712507,
           21715114-21715199,21715297-21716715
          Length = 767

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 368 NESAN---ARGEAVCVLGALPLPRSLTRCAR 451
           +ESAN   AR EAV  +G +P+   L RC+R
Sbjct: 434 DESANVDAARSEAVMRVGGIPMLLDLARCSR 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,484,513
Number of Sequences: 37544
Number of extensions: 453660
Number of successful extensions: 1202
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2741249160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)