Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_H01
(896 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.13
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 30 0.51
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 1.6
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 27 2.7
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 27 2.7
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 26 6.3
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 6.3
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 26 8.4
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.9 bits (69), Expect = 0.13
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Frame = +2
Query: 671 PGVSPL--ESSXVRPPVPDPAALPDTCPPFFPSGKRGAFSYLPPVG--IXXRLXVVPPPX 838
P + PL S PPVP P +LP + PP P + P + + PP
Sbjct: 401 PALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP 460
Query: 839 WAXXPNPPVXP 871
PP+ P
Sbjct: 461 AGMPAAPPLPP 471
Score = 27.1 bits (57), Expect = 3.6
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 9/79 (11%)
Frame = +2
Query: 626 TLKSEVAKPDRTIKIPGVSPLESSXVRPPVPDP---------AALPDTCPPFFPSGKRGA 778
T+ S P R I ++P +S +PP+P P AA PP P +R
Sbjct: 263 TVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNR 322
Query: 779 FSYLPPVGIXXRLXVVPPP 835
PP+G +PPP
Sbjct: 323 GK--PPIGNGSSNSSLPPP 339
Score = 26.6 bits (56), Expect = 4.8
Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Frame = +2
Query: 683 PLESSXV--RPPVPDPAALPDTCPPFFPSGKRGAFSYLPPVGIXXRLXVVPPPXWAXXPN 856
PL SS PP P PA +P P P + + PPV L PP + P+
Sbjct: 378 PLSSSRAVSNPPAPPPA-IPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPP--SLPPS 434
Query: 857 -PPVXP 871
PP P
Sbjct: 435 APPSLP 440
Score = 26.6 bits (56), Expect = 4.8
Identities = 18/54 (33%), Positives = 20/54 (37%)
Frame = +2
Query: 710 PVPDPAALPDTCPPFFPSGKRGAFSYLPPVGIXXRLXVVPPPXWAXXPNPPVXP 871
P P +LP + PP P G A P I L P A P PP P
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMP---AAPPLPPAAP 474
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 29.9 bits (64), Expect = 0.51
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Frame = +2
Query: 668 IPGVSPLESSXVRPPVP----DPAALPDTCPPFFPSGKRG 775
IPG L + + PP+P +PAA P PPF GKRG
Sbjct: 157 IPGFGNLPNPAM-PPIPFLPFNPAAQPPFPPPFKMRGKRG 195
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.3 bits (60), Expect = 1.6
Identities = 25/78 (32%), Positives = 30/78 (38%), Gaps = 2/78 (2%)
Frame = +2
Query: 632 KSEVAKPDRTIKIPGVSPLESSXVRPPVPDP--AALPDTCPPFFPSGKRGAFSYLPPVGI 805
K VA P V P+ + PPVP P AA P P P + + + PPV
Sbjct: 1096 KPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVA-APPVPA 1154
Query: 806 XXRLXVVPPPXWAXXPNP 859
VP P A P P
Sbjct: 1155 PSGAPPVPKPSVAAPPVP 1172
Score = 26.2 bits (55), Expect = 6.3
Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Frame = +2
Query: 674 GVSPLESSXVRPPVPDPA-ALPDTCPPFFPSGKRGAFSYLPPVGI-XXRLXVVPPP 835
GV P+ PPVP P+ +P PP + LPPV + + VP P
Sbjct: 1187 GVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 25.8 bits (54), Expect = 8.4
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Frame = +2
Query: 674 GVSPL-ESSXVRPPVPDPAALPDTCPPFFPSGKRGAFSYLPPVGIXXRLXVVPPPXWAXX 850
G P+ + S PPVP P+ P P + A S PPV + V PP A
Sbjct: 1119 GAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPV---PKPSVAAPPVPAPS 1175
Query: 851 PN-PPVXPERVGL 886
PPV G+
Sbjct: 1176 SGIPPVPKPAAGV 1188
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 27.5 bits (58), Expect = 2.7
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +2
Query: 608 RASQKSTLKSEVAKPDRTIKIPGVSPLESSXVRPPVPDPAALPD 739
R + S +K A RTI + GV+P ES +RPP P +PD
Sbjct: 505 RLERTSPVKELPAIRPRTIPLNGVAPYESE-LRPP-PKWKPMPD 546
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 595 SAPLTSITKIDAQVRGGETRQDYKDTRRFPPGKLPRAPSCSRP 723
S S T ++ G RQDY + R+ LP +PS + P
Sbjct: 131 STASNSSTLTPNRIYGDRNRQDYAQSSRYTLPSLPSSPSYNCP 173
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/16 (68%), Positives = 11/16 (68%)
Frame = +1
Query: 745 SAFFPFGEAWRFLIPP 792
S F PFGE R LIPP
Sbjct: 524 SLFSPFGELGRILIPP 539
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +2
Query: 692 SSXVRPPVPDPAALPDTCPPFFPSGKRGAFSYLPPVG 802
S+ PP P P ALP PP S LPP G
Sbjct: 1877 SNQAAPPPPPPMALPKAGPP-----SAAPTSALPPAG 1908
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 8.4
Identities = 18/64 (28%), Positives = 25/64 (39%)
Frame = +2
Query: 668 IPGVSPLESSXVRPPVPDPAALPDTCPPFFPSGKRGAFSYLPPVGIXXRLXVVPPPXWAX 847
+P V + ++ PP+ P LP T FP G P+G V PPP
Sbjct: 239 VPNVPLVGATTAVPPLSIPNVLPFTAAQHFP-GMPAMPMMNVPMGPGGAPLVPPPPPGMV 297
Query: 848 XPNP 859
+P
Sbjct: 298 MASP 301
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,971,068
Number of Sequences: 5004
Number of extensions: 56124
Number of successful extensions: 172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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