Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_H01
(896 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr... 32 0.48
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr... 32 0.48
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.64
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.64
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.64
AF026056-1|AAB81844.1| 298|Caenorhabditis elegans NK-2 class ho... 31 1.1
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z79757-1|CAB60999.1| 299|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z80215-14|CAI79138.1| 662|Caenorhabditis elegans Hypothetical p... 29 3.4
Z80215-13|CAI79137.1| 640|Caenorhabditis elegans Hypothetical p... 29 3.4
Z80215-12|CAB02277.1| 652|Caenorhabditis elegans Hypothetical p... 29 3.4
Z54235-7|CAA90974.3| 611|Caenorhabditis elegans Hypothetical pr... 29 3.4
AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical ... 29 4.5
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 28 7.9
AC006729-6|AAF60464.1| 282|Caenorhabditis elegans Hypothetical ... 28 7.9
>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical protein
C46C2.1b protein.
Length = 1677
Score = 32.3 bits (70), Expect = 0.48
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +2
Query: 614 SQKSTLKSEVAKPDRTIKIPGVSPLES---SXVRPPVPDPAALPDTCPPFFPS 763
S S+++S + P R + VS ES S + P P+P +CPP PS
Sbjct: 1204 SNMSSIQSTTSVPGRRFTVQPVSQAESGISSSISTPHPEPTPAITSCPPPVPS 1256
>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical protein
C46C2.1a protein.
Length = 1838
Score = 32.3 bits (70), Expect = 0.48
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +2
Query: 614 SQKSTLKSEVAKPDRTIKIPGVSPLES---SXVRPPVPDPAALPDTCPPFFPS 763
S S+++S + P R + VS ES S + P P+P +CPP PS
Sbjct: 1204 SNMSSIQSTTSVPGRRFTVQPVSQAESGISSSISTPHPEPTPAITSCPPPVPS 1256
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.9 bits (69), Expect = 0.64
Identities = 19/54 (35%), Positives = 22/54 (40%)
Frame = +2
Query: 671 PGVSPLESSXVRPPVPDPAALPDTCPPFFPSGKRGAFSYLPPVGIXXRLXVVPP 832
PG P S PP P P P PP P G +G PP G+ + V P
Sbjct: 748 PGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIP 801
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.9 bits (69), Expect = 0.64
Identities = 19/54 (35%), Positives = 22/54 (40%)
Frame = +2
Query: 671 PGVSPLESSXVRPPVPDPAALPDTCPPFFPSGKRGAFSYLPPVGIXXRLXVVPP 832
PG P S PP P P P PP P G +G PP G+ + V P
Sbjct: 748 PGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIP 801
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.9 bits (69), Expect = 0.64
Identities = 19/54 (35%), Positives = 22/54 (40%)
Frame = +2
Query: 671 PGVSPLESSXVRPPVPDPAALPDTCPPFFPSGKRGAFSYLPPVGIXXRLXVVPP 832
PG P S PP P P P PP P G +G PP G+ + V P
Sbjct: 331 PGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPPPPPGMFAPMAPVIP 384
>AF026056-1|AAB81844.1| 298|Caenorhabditis elegans NK-2 class
homeodomain protein protein.
Length = 298
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +1
Query: 505 GITQERTCEQKASKRPGTVKRPRCWRFSIGS--APLTSITKIDAQ-VRGGETRQDYKDTR 675
GI +E++ E SKR P +FS+ S +PL S+ ++ Q ++ ++ T
Sbjct: 22 GIDEEKSSEDDCSKRSKVKSNPS--KFSVNSILSPLESLVRVQQQLLKMAASKSGTPGTN 79
Query: 676 RFPPGKLPRAP 708
PG+ P P
Sbjct: 80 AGVPGEFPYGP 90
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 30.7 bits (66), Expect = 1.5
Identities = 25/91 (27%), Positives = 35/91 (38%), Gaps = 2/91 (2%)
Frame = +2
Query: 620 KSTLKSEVAKPDRTIKIPG--VSPLESSXVRPPVPDPAALPDTCPPFFPSGKRGAFSYLP 793
K S + P ++I P + P + PP P P +P PP F G +P
Sbjct: 44 KQAPPSGILPPGQSIPKPSFFIPPPVPNGFIPPPPGPGGIPPP-PPMFAGG-------IP 95
Query: 794 PVGIXXRLXVVPPPXWAXXPNPPVXPERVGL 886
P + PPP P PP P +G+
Sbjct: 96 PPPPMMG-GIPPPPPMFGAPPPPPPPSGLGV 125
>Z79757-1|CAB60999.1| 299|Caenorhabditis elegans Hypothetical
protein F55B12.1 protein.
Length = 299
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = +1
Query: 505 GITQERTCEQKASKRPGTVKRPRCWRFSIGS--APLTSITKIDAQ-VRGGETRQDYKDTR 675
GI +E++ E SKR P +FS+ S +PL S+ ++ Q ++ ++ T
Sbjct: 22 GIDEEKSSEDDCSKRSKVKSNPS--KFSVNSILSPLESLVRVQQQLLKMAASKSGTPGTN 79
Query: 676 RFPPGKLPRAP 708
PG P P
Sbjct: 80 AGVPGAFPYGP 90
>Z80215-14|CAI79138.1| 662|Caenorhabditis elegans Hypothetical
protein C36B1.12c protein.
Length = 662
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 584 KRQQRGLFTVPGLLLAFCSHVLSCV-IPLILWITVL 480
+RQ + + +A C HVL C+ +P + WI++L
Sbjct: 390 RRQPYAFILLDVINMALCMHVLKCLRLPSLKWISIL 425
>Z80215-13|CAI79137.1| 640|Caenorhabditis elegans Hypothetical
protein C36B1.12b protein.
Length = 640
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 584 KRQQRGLFTVPGLLLAFCSHVLSCV-IPLILWITVL 480
+RQ + + +A C HVL C+ +P + WI++L
Sbjct: 390 RRQPYAFILLDVINMALCMHVLKCLRLPSLKWISIL 425
>Z80215-12|CAB02277.1| 652|Caenorhabditis elegans Hypothetical
protein C36B1.12a protein.
Length = 652
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 584 KRQQRGLFTVPGLLLAFCSHVLSCV-IPLILWITVL 480
+RQ + + +A C HVL C+ +P + WI++L
Sbjct: 390 RRQPYAFILLDVINMALCMHVLKCLRLPSLKWISIL 425
>Z54235-7|CAA90974.3| 611|Caenorhabditis elegans Hypothetical
protein C09G9.4 protein.
Length = 611
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 632 KSEVAKPDRTIKIPGVSPLESSXVRPPVPDPAALPDTCPP 751
KSE + ++ P V S VRPP P+P P PP
Sbjct: 31 KSEKVSEYKKVENPDVENFSKSSVRPPPPEPK--PQRSPP 68
>AL032625-4|CAB63350.2| 792|Caenorhabditis elegans Hypothetical
protein Y37H9A.3 protein.
Length = 792
Score = 29.1 bits (62), Expect = 4.5
Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 4/80 (5%)
Frame = +2
Query: 665 KIPGVSPLESSXVRPPVPDPA--ALPDTCPPFFPSGKRGAFSYLPPVGIXXRLXVVPPPX 838
+IP P SS P+P PA A P PP P + + P I R P P
Sbjct: 189 EIPVAPPNFSSAAAEPLPPPAPTAQPAHHPPAPPIRQAAHAAESSPPPIPQRKSSAPAPT 248
Query: 839 WAXXP--NPPVXPERVGLIR 892
A P P P++ + R
Sbjct: 249 AAAPPATKEPTDPKKAAIYR 268
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 668 IPGVSPLESSXVRPPVPDPAALPDTCPP 751
+PG++PL + PP P P + + PP
Sbjct: 525 MPGMAPLSTGAPTPPPPPPVGMANGGPP 552
>AC006729-6|AAF60464.1| 282|Caenorhabditis elegans Hypothetical
protein Y24D9A.5 protein.
Length = 282
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +1
Query: 475 GGNTVIHRIRGITQERTCEQKASKRPGTVK 564
GG +V +R + Q+++ ++SKRPG ++
Sbjct: 167 GGKSVFYRFTNLIQKKSFSVRSSKRPGILQ 196
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,122,946
Number of Sequences: 27780
Number of extensions: 357355
Number of successful extensions: 1217
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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