Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_G23
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    31   0.22 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.87 
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    28   1.5  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    27   3.5  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    27   4.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.7  
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce...    26   6.1  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    26   6.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   8.1  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    26   8.1  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +1

Query: 568 ASKGKLPPPSNAASTPNTAIAPPLIF---PSTPVLAPVVSPPIINRTP 702
           +S    PP + A  TP + + PP      PS P  +P  +PPI ++ P
Sbjct: 118 SSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAP 165



 Score = 29.5 bits (63), Expect = 0.66
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 583 LPPPSNAASTPNTAIAPPLIFPSTPVLAPVVSPPIINRTP 702
           LPPP+  A+   +  + P +  + P + P V PP +++ P
Sbjct: 171 LPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAP 210



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
 Frame = +1

Query: 583 LPPPSNAASTPNTAIAPPL-------IFPSTPVLAPVVSPPIINRTPEGKP 714
           +PPPS A++ P  + APP+         P+ PV +P  +P + +  P   P
Sbjct: 149 IPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.87
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +1

Query: 586 PPPSNAASTPNTAIAPPLIFPSTPVLAPVVSPPII 690
           PPP    S P+T   PP +  S  V  P   PP I
Sbjct: 361 PPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAI 395



 Score = 29.1 bits (62), Expect = 0.87
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +1

Query: 583 LPPPSNAASTPNTAI-APPLIFPSTPVLAPVVSPPIINRTPEGKP 714
           LPP  NA+ T    +  PP + PS P   P  +PP +   P G P
Sbjct: 403 LPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSL---PMGAP 444



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +1

Query: 559 RFIASKGKLPPPSNAASTPNTAIAPPLIFP--STPVLAPV 672
           R   S G+ PPP +++   +   APP   P  S P L P+
Sbjct: 367 RSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPL 406


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/71 (23%), Positives = 29/71 (40%)
 Frame = +1

Query: 505 NGYTRRFTPQTGTKGIMQRFIASKGKLPPPSNAASTPNTAIAPPLIFPSTPVLAPVVSPP 684
           NGY ++ +P +    I  R   +      P  A+ TP++    P     +P L+ + S  
Sbjct: 243 NGYRKKPSPLSPNSSIRNREGGNGSYFDGPLTASPTPSSPTGTPNSMSKSPSLSSLASTG 302

Query: 685 IINRTPEGKPV 717
              R    KP+
Sbjct: 303 ASYRPGPSKPL 313


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 583 LPPPSNAASTPNTAIAPPLIFPSTPVLAP 669
           LP  S   S+PN+ ++  ++  STP+L P
Sbjct: 416 LPQRSRTISSPNSPLSATVLPSSTPILLP 444


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 577 GKLPPPSNAASTPNTAIAPPLI 642
           G  PPPS++A++  T IA PL+
Sbjct: 213 GHPPPPSDSANSSVTPIAAPLV 234


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 586 PPPSNAASTPNTAIAPPLIFPSTPVLAPVVSPP 684
           PPP  A   P  A AP  + P  P++     PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765


>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 762 VXXVSSLRXGTVSLSYWFPFRRTIDDRRGNYWCQ 661
           +  V+SLR G+V      PF  T+DD  GN W +
Sbjct: 164 IEKVNSLRSGSV------PFTITVDDITGNSWIE 191


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 556 QRFIASKGKLPPPSNAASTPNTAIAPPLIFPSTPVLAPVVSPPI 687
           Q+F+AS  ++P P  + + P+ A    ++    P   P + PPI
Sbjct: 168 QKFMASLAQIPGPLPSGNVPSPAEFQAMMASGFPPFMP-IPPPI 210


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = +1

Query: 583  LPPPSNAASTPNTAIAPPLIFPST---PVLAPVVSPPIINRTPEGKP 714
            +P PS A   P  +  PP+  PS    PV  P V+ P +   P G P
Sbjct: 1076 IPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPV-PAPSGAP 1121


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +3

Query: 633 SPYFPLDSSIGTSSFPSYH--QSYA*RETSTKGIRSPXEEKIXXGP 764
           SPYF  +  + +SSFP  H  Q      TS + I S    +   GP
Sbjct: 70  SPYFTNNERLNSSSFPQIHDNQLSPSFNTSYQAIPSSSSNRSRGGP 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,948,034
Number of Sequences: 5004
Number of extensions: 56152
Number of successful extensions: 199
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)