Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_G23
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.5  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   8.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
 Frame = -3

Query: 731 PYP---FRTGFPSGVRLMIGGETTGANTGVEGKIRGGAMAVFGVEAAFEGGGSFPLLAIN 561
           P+P   FR    S     +   + G     + ++R      + V+    GG S    A+ 
Sbjct: 91  PFPAAAFRQDVHSAAYRCVASNSVGRVLSRDVQVRAVVAQAYKVDVEVIGGASRGCTAVL 150

Query: 560 LCIIP 546
            C++P
Sbjct: 151 RCVVP 155


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
 Frame = -3

Query: 731 PYP---FRTGFPSGVRLMIGGETTGANTGVEGKIRGGAMAVFGVEAAFEGGGSFPLLAIN 561
           P+P   FR    S     +   + G     + ++R      + V+    GG S    A+ 
Sbjct: 91  PFPAAAFRQDVHSAAYRCVASNSVGRVLSRDVQVRAVVAQAYKVDVEVIGGASRGCTAVL 150

Query: 560 LCIIP 546
            C++P
Sbjct: 151 RCVVP 155


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 610  LRPHLKAGAAFLCW 569
            LRP+L+  AA L W
Sbjct: 1178 LRPYLRTAAAILTW 1191


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 237 AHGETRNAIRYPNGKEADNCTQMFHCFDITAPT 139
           AHG   +A RY  G  A   T +  CF+   P+
Sbjct: 445 AHGLPPSATRYDLGAVATVGTTVAPCFEEPLPS 477


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +1

Query: 595 SNAASTPNTAIAPPLIFPSTPVLAPVVSPPIINRTPEGKPVRKGYGPRSKR 747
           +N++ +PN  IA      S P  +   SPP       G+P ++  G  +K+
Sbjct: 507 TNSSPSPNPRIA------SAPSSSTSSSPPAKGAAAAGQPSKRNGGETNKQ 551


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 673 VSPPIINRTPEGKPV 717
           +SP ++ + P GKPV
Sbjct: 79  LSPEVLKKEPYGKPV 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,479
Number of Sequences: 438
Number of extensions: 3944
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)