Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_G22
(883 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0656 + 25926192-25926289,25927530-25927659,25928248-259282... 31 1.2
11_02_0114 + 8456620-8457600,8457612-8457758,8457806-8458018 29 4.9
06_02_0337 - 14638429-14639295,14640281-14640460,14640743-14641831 29 4.9
06_01_0769 - 5745324-5746970 29 4.9
02_02_0211 + 7898434-7898574,7898759-7899349,7899575-7899821,790... 29 4.9
01_04_0010 - 15058175-15058195,15058320-15058430,15059031-150592... 29 4.9
10_04_0008 + 7442371-7442982 28 8.6
08_02_0175 + 13772394-13773094,13773329-13773860 28 8.6
05_03_0318 - 12292969-12293222,12293305-12293898,12297102-122974... 28 8.6
04_01_0409 - 5409018-5410268 28 8.6
01_03_0284 - 14595643-14595663,14595978-14596018,14596379-145967... 28 8.6
01_03_0282 - 14580875-14580891,14582126-14585855 28 8.6
>11_06_0656 +
25926192-25926289,25927530-25927659,25928248-25928294,
25929274-25929388,25929504-25929753,25930079-25930239,
25930372-25930567,25930672-25930836,25930918-25931070,
25931160-25931248,25931385-25931423,25931460-25931681,
25933503-25934165
Length = 775
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +3
Query: 417 DDDKLDLLQKIAELNKQKSQLMHHVFMVSCENRNLWNKISTI 542
DD + ++LQ+I +N+ Q + +V EN+ L K+S++
Sbjct: 33 DDKQTEMLQEILRMNRMMQQQNERIKLVLRENQELREKVSSL 74
>11_02_0114 + 8456620-8457600,8457612-8457758,8457806-8458018
Length = 446
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +3
Query: 507 ENRNLWNKISTIKNCNKPNKENVKNPLVR 593
E W IS C KP N+ NP +R
Sbjct: 131 EKNRFWEDISGAPICKKPRTNNIHNPTLR 159
>06_02_0337 - 14638429-14639295,14640281-14640460,14640743-14641831
Length = 711
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/29 (37%), Positives = 13/29 (44%)
Frame = +3
Query: 507 ENRNLWNKISTIKNCNKPNKENVKNPLVR 593
E W IS C KP N+ NP +R
Sbjct: 454 EKNRFWEDISGAPICKKPRTNNIHNPTLR 482
>06_01_0769 - 5745324-5746970
Length = 548
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -2
Query: 366 CCHSPKHLFCVVVIDNDPSWHEEPTREHCGD 274
C HSP L C D DP+ H P HC D
Sbjct: 510 CLHSPPPLVCRARRDRDPAAH-LPFLRHCED 539
>02_02_0211 +
7898434-7898574,7898759-7899349,7899575-7899821,
7900020-7900118,7900158-7900321,7900371-7900870,
7901007-7901256,7901461-7901549,7901823-7902064,
7902175-7902479,7902798-7902906,7903150-7903313
Length = 966
Score = 29.1 bits (62), Expect = 4.9
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 507 ENRNLWNKISTIKNCNKPNKENVKNPLVR 593
E W IS+ C KP +++ NP +R
Sbjct: 818 EKNRFWEDISSAPICKKPRTDDIHNPTLR 846
>01_04_0010 - 15058175-15058195,15058320-15058430,15059031-15059246,
15059327-15059505,15059655-15059820,15059914-15059972,
15060065-15060107,15060285-15060354,15060458-15060547,
15060621-15060742,15060777-15060808,15060876-15061064,
15061148-15061241,15061325-15061412,15061498-15061718,
15061924-15061997,15062081-15062363,15062455-15062589,
15062721-15062942,15063029-15063208,15063305-15063402,
15063522-15063634,15064156-15064259,15064400-15064522,
15064857-15065192
Length = 1122
Score = 29.1 bits (62), Expect = 4.9
Identities = 21/82 (25%), Positives = 42/82 (51%)
Frame = +3
Query: 336 RRINVLENDNMRLKLDATRNNENIAFHDDDKLDLLQKIAELNKQKSQLMHHVFMVSCENR 515
+R+N L +R + A + + I D+D+L+ L AE ++K QL+ F + R
Sbjct: 844 QRLNELYEKEVRYLMQANQKKDTIDGEDEDQLEPL--TAEEQEEKEQLLEEGF--ATWTR 899
Query: 516 NLWNKISTIKNCNKPNKENVKN 581
+N + I+ C K + ++++
Sbjct: 900 RDFN--TFIRACEKYGRNDIRS 919
>10_04_0008 + 7442371-7442982
Length = 203
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +3
Query: 507 ENRNLWNKISTIKNCNKPNKENVKNPLVR 593
E W IS C KP + ++ NP +R
Sbjct: 96 EKNRFWEDISGAPICKKPKRNDIHNPTLR 124
>08_02_0175 + 13772394-13773094,13773329-13773860
Length = 410
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +3
Query: 507 ENRNLWNKISTIKNCNKPNKENVKNPLVR 593
E W IS C KP ++ NP++R
Sbjct: 162 EKNRFWEDISGAPICKKPRTNDIHNPILR 190
>05_03_0318 -
12292969-12293222,12293305-12293898,12297102-12297415,
12297712-12297893,12297960-12298187,12298234-12298698,
12299393-12299443
Length = 695
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +3
Query: 507 ENRNLWNKISTIKNCNKPNKENVKNPLVR 593
E W IS+ C KP ++ NP +R
Sbjct: 457 EKNRFWEDISSAPICKKPRTNDIHNPTLR 485
>04_01_0409 - 5409018-5410268
Length = 416
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +3
Query: 507 ENRNLWNKISTIKNCNKPNKENVKNPLVR 593
E W IS+ C KP ++ NP +R
Sbjct: 81 EKNRFWEDISSAPICEKPRTNDIHNPTLR 109
>01_03_0284 -
14595643-14595663,14595978-14596018,14596379-14596732,
14597023-14597494,14597524-14600001
Length = 1121
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 276 HHSVHELALHAMRDRCLLLQRRINV--LENDNMRLKLDATRNN 398
H +H++ALH MR+ C+ + N L++ + L L R N
Sbjct: 499 HDLMHDIALHVMREECITVTGTPNSTRLKDSSRHLFLSYDRTN 541
>01_03_0282 - 14580875-14580891,14582126-14585855
Length = 1248
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +3
Query: 192 F*EIMDTSSIVSFNNDSTFQATLKGDYNHHSVHELALHAMRDRCLLLQRRINVLE 356
F ++ +TS + D Q K H +H++AL+ MR+ C+ + R N ++
Sbjct: 472 FQDVDETSLFKMYRRDKLCQFR-KTCKIHDLMHDIALYVMREECVTVMGRPNSIQ 525
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,974,265
Number of Sequences: 37544
Number of extensions: 320270
Number of successful extensions: 801
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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