Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_G19
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    58   2e-09
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    28   1.5  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   2.0  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    28   2.0  
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    28   2.0  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    27   2.6  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    27   4.6  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   8.0  

>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 204

 Score = 58.0 bits (134), Expect = 2e-09
 Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 1/97 (1%)
 Frame = +1

Query: 319 RNLDLEVDMYIQKVTELDKKVLQWAIDLTEKNMKTLYETCAWGWNPNRKLEEMTDDAAWY 498
           +NL + V++Y      L+K +LQ   +L +KNM+ LY   ++GW+ + KL+EM  +   Y
Sbjct: 32  KNLGVWVEIY----HHLEKGLLQQCFNLVKKNMEALYRQSSFGWDDSEKLKEMEMEKLEY 87

Query: 499 LIAREKNG-TLLAFSHFRFDLDFGEPVLYCYEVQVEK 606
           +   EK    L+ F  F   ++ G   LY YE+Q+++
Sbjct: 88  ICIFEKTSKKLVGFLSFEDTVEAGLTCLYIYEIQLDE 124


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 23/77 (29%), Positives = 30/77 (38%)
 Frame = -2

Query: 727 SXAEGXVREXSETHATHVGGVGKLLQHAEDALAEPRDDARPSLPAPRNNTILVLQSPGQI 548
           S  EG   E S     H   + +    +ED + +P D  R +  AP          P Q 
Sbjct: 157 SGGEGESDEGSFNTQHHRSPIFQAYPSSEDLVGDPNDPYRRTRRAPIKTN--PHDIPSQF 214

Query: 547 *SVRKLGVFHFSHGLSG 497
              RKLG+ H  HG  G
Sbjct: 215 -IFRKLGLHHGKHGHHG 230


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 257 VGHSISNAPLFLLSSKPLIFLFVCSCY*FF 168
           V  ++SN   FL+ SKPL   F C+C  +F
Sbjct: 8   VSKNLSNTSAFLVKSKPLYISF-CTCKAYF 36


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
            Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 192  KQKDKRLARKQEQRRIADAMTHVTT 266
            KQ+D  LAR++E RR  ++++ +TT
Sbjct: 983  KQRDSLLARREELRRSQESISELTT 1007


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 162 MGKKSITATNKQKDKRLARKQEQRRIADAMTHVTTANKLQDLASL 296
           +G++SIT + K+KD+R      +R+ A+A     +   L D+  L
Sbjct: 135 VGQESITGSAKRKDRRSKTNGSKRQKAEANREPPSDISLSDIGGL 179


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = -2

Query: 592 PRNNTILVLQSPGQI*SVRKLGVFHFSHGLSGTRLHHQSFPPAYD*DSN---PMHKF 431
           P+++ I  L     +  +R+LG  H  HG      H  SF P  D  SN   P+ KF
Sbjct: 574 PQDDDIKGLSKDLFVQLLRELGQGHLKHGFDRAIEHLSSFDPRRDFSSNTVEPVVKF 630


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -3

Query: 525 CSIFLTGYQVPGCIISHFLQLTIRIPTPCTSFIECLHIFFSQVYGPL*YLFIQ 367
           CS     + V    + HFL +TI +   C  F E   +F    Y  L ++ +Q
Sbjct: 533 CSFGSNSFTVWEDRLCHFLIITIGLVMFCKCFSEMSPLFACSTYSALAFILLQ 585


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 287 QVLKFIRSCNV-GHSISNAPLFLLSSKPL 204
           QV  F+ S  + G+SI +APL  LSSK L
Sbjct: 407 QVYFFLYSLMIYGYSIGSAPLISLSSKQL 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,853,137
Number of Sequences: 5004
Number of extensions: 55124
Number of successful extensions: 169
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)