Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_G17
         (894 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   5.0  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   6.6  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   6.6  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = +2

Query: 458 VYDEPPRINNTILPISVASCAFQFQSW 538
           +Y     IN    P    SC  +F SW
Sbjct: 153 IYKSSCEINVEYFPFDEQSCIMKFGSW 179


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 487 IIYPWWFIIYSAA 449
           IIY +WFII + A
Sbjct: 232 IIYSYWFIIQAVA 244


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 487 IIYPWWFIIYSAA 449
           IIY +WFII + A
Sbjct: 108 IIYSYWFIIQAVA 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,059
Number of Sequences: 438
Number of extensions: 4944
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)