Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_G16
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    30   0.51 
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    29   0.67 
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    29   0.89 
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p...    27   3.6  
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    27   4.7  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    26   6.3  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    26   8.3  

>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 29.9 bits (64), Expect = 0.51
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = -3

Query: 486 SSATKRLLM*NTTLFTLIFMLVFRAMSL-NSTKNLSKEIACDLQ*FRIITLA*TTSSVVI 310
           S A K+LL+ +     L F   +R +S+ N+TKNL+K+    L  F++ ++A      V+
Sbjct: 438 SKAYKKLLLRSLYAELLNFSEQYRRLSIKNATKNLTKDNFFSLNNFKVTSVAPPQIGQVL 497

Query: 309 P 307
           P
Sbjct: 498 P 498


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
 Frame = +2

Query: 359 CKSHAISLDKFLVEFKDIARKTNIKIXXXXXXFYIRRRLVAEELKLALLCPRKMHMLDE- 535
           C S +  +D++ V   ++   TNI +       Y+R +L  +E     L     H++ + 
Sbjct: 106 CFSESSQVDQYSVTETNLQYATNIGLNLLQQLRYLRLQLSEKEDLHKKLSVDNAHLIKQL 165

Query: 536 DSSWKHVKDITKLIRGKTQVPKSLHNDMIQKKLKILTENMKIENELXSKKGK 691
           D    ++K + K  + K Q  + L    +Q  +K LTE   +   L  +K K
Sbjct: 166 DLLSSNMKTLMK-EKTKVQGQRDLLEQRLQGLMKKLTEVESLTVSLNDEKNK 216


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = +2

Query: 263 CEFNIGDLDEIKKREGITTEDVVQASVMIR-NYCKS-HAISLDKFLVEFKDIARKTNIKI 436
           C +N+G LDE +KR+ +   D+  +  +I+ N  +S H  S +K      DI+R T  K+
Sbjct: 818 CVYNVGLLDE-EKRKDLANSDLNSSPKLIQGNDSRSAHESSANKLFSFVHDISRLTITKL 876


>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 612

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 137 SDDWSPAYSAKVVPPITPICDSTLQQQSTKI 45
           S DW   Y A  +PP+ P  D+TL     K+
Sbjct: 442 SIDWDTWYHAPGMPPVKPHFDTTLADPCYKL 472


>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 18/85 (21%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
 Frame = +2

Query: 509 PRKMHMLDE-DSSWKHVKDITKLIRGKTQVPKSLHNDMIQKKLKILT-----ENMKIENE 670
           P  +  L + D  ++  ++IT  I  K  + +   N++ +  L++ +     EN + ++E
Sbjct: 662 PENIEKLKQNDDHFEVTEEITSTINSK--ISEKQENNVAETILEVTSSPKSSENSQKQSE 719

Query: 671 LXSKKGKNDYYDINDIFSNMKKQVT 745
           +  K+G+++  + +D+ S+ K+  T
Sbjct: 720 ITKKRGRDEEDEPSDLHSSPKRPKT 744


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 30  MGIP*DFSGLLLQRTITDWSYWRNNFRRIS 119
           +G P  FSG  LQ T T+  YWR   +R S
Sbjct: 392 VGYP-PFSGSTLQETWTNLYYWREMLQRPS 420


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 34/152 (22%), Positives = 69/152 (45%), Gaps = 15/152 (9%)
 Frame = +2

Query: 305 EGITTEDVVQASVMIRNYCKSHAISLDKFLVE--FKDIAR-KTNIKIXXXXXXFYIRRRL 475
           E I+T +    +  IRN  +++ +   K L++    DI R K ++         Y+    
Sbjct: 407 ETISTLEYAARAKSIRNKPQNNQLVFRKVLIKDLVLDIERLKNDLNATRKKNGVYLAEST 466

Query: 476 VAEELKLA----LLCP---RKMHMLDED--SSWKHVKDITKLIRGKTQVPKSLHNDMIQK 628
             E +       LLC    RK+ +LD +  SS + ++ ++K  +   +  ++L   ++  
Sbjct: 467 YKELMDRVQNKDLLCQEQARKLEVLDLNVKSSREQLQYVSKSNQEHKKEVEALQLQLVNS 526

Query: 629 KLK---ILTENMKIENELXSKKGKNDYYDIND 715
             +   + +EN K++NEL  +  K   Y+ N+
Sbjct: 527 STELESVKSENEKLKNELVLEIEKRKKYETNE 558


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,318,715
Number of Sequences: 5004
Number of extensions: 66888
Number of successful extensions: 232
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)