Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_G16
(890 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction... 33 0.21
U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction... 33 0.21
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction... 33 0.21
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction... 33 0.21
U61947-2|AAB03135.1| 498|Caenorhabditis elegans Hypothetical pr... 33 0.36
Z81459-1|CAB03827.3| 731|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z79604-6|CAB97241.2| 731|Caenorhabditis elegans Hypothetical pr... 29 5.9
U39652-5|AAV28338.1| 986|Caenorhabditis elegans Hypothetical pr... 29 5.9
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr... 29 5.9
Z68108-2|CAA92135.1| 406|Caenorhabditis elegans Hypothetical pr... 28 7.8
>U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction
molecule protein1, isoform b protein.
Length = 944
Score = 33.5 bits (73), Expect = 0.21
Identities = 47/177 (26%), Positives = 72/177 (40%), Gaps = 4/177 (2%)
Frame = +1
Query: 232 RPDRHPHKRTLRIQYRRLGRDKKTRRNHY*RRGSGQRY--DPELLQVARNLLRQIFG*VQ 405
R DR + R + Q ++ + + R +R D E LQ R LLRQ Q
Sbjct: 285 RRDREDNARRILAQREHQEMERLREQQNLSERALAERERADKERLQQER-LLRQ-----Q 338
Query: 406 RHRPKN*HKN*CEQRRILHQET-LGR*RIEAGSALSA*NAHARRGFLMETRERYHEVDQR 582
R + + + E R+ +E L R R + A R ME ER +R
Sbjct: 339 REKKRREEWDRLESIRLAEEEAELARRRALEKERIDREKAEEERK-TMERLERERARLER 397
Query: 583 ENSSPEE-PSQRYDTEEIENFDRKHEN*ERIXIEKGQKRLL*HKRHFFEYEKTSDAR 750
E E ++ +TE IE R+HE E IE+ ++ + +R E +K + R
Sbjct: 398 ERLEEERRQKEKAETERIERERREHERIEIERIERIKRERIERERREREEKKAEEDR 454
>U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction
molecule protein1, isoform c protein.
Length = 1148
Score = 33.5 bits (73), Expect = 0.21
Identities = 47/177 (26%), Positives = 72/177 (40%), Gaps = 4/177 (2%)
Frame = +1
Query: 232 RPDRHPHKRTLRIQYRRLGRDKKTRRNHY*RRGSGQRY--DPELLQVARNLLRQIFG*VQ 405
R DR + R + Q ++ + + R +R D E LQ R LLRQ Q
Sbjct: 285 RRDREDNARRILAQREHQEMERLREQQNLSERALAERERADKERLQQER-LLRQ-----Q 338
Query: 406 RHRPKN*HKN*CEQRRILHQET-LGR*RIEAGSALSA*NAHARRGFLMETRERYHEVDQR 582
R + + + E R+ +E L R R + A R ME ER +R
Sbjct: 339 REKKRREEWDRLESIRLAEEEAELARRRALEKERIDREKAEEERK-TMERLERERARLER 397
Query: 583 ENSSPEE-PSQRYDTEEIENFDRKHEN*ERIXIEKGQKRLL*HKRHFFEYEKTSDAR 750
E E ++ +TE IE R+HE E IE+ ++ + +R E +K + R
Sbjct: 398 ERLEEERRQKEKAETERIERERREHERIEIERIERIKRERIERERREREEKKAEEDR 454
>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
molecule protein1, isoform d protein.
Length = 1439
Score = 33.5 bits (73), Expect = 0.21
Identities = 47/177 (26%), Positives = 72/177 (40%), Gaps = 4/177 (2%)
Frame = +1
Query: 232 RPDRHPHKRTLRIQYRRLGRDKKTRRNHY*RRGSGQRY--DPELLQVARNLLRQIFG*VQ 405
R DR + R + Q ++ + + R +R D E LQ R LLRQ Q
Sbjct: 285 RRDREDNARRILAQREHQEMERLREQQNLSERALAERERADKERLQQER-LLRQ-----Q 338
Query: 406 RHRPKN*HKN*CEQRRILHQET-LGR*RIEAGSALSA*NAHARRGFLMETRERYHEVDQR 582
R + + + E R+ +E L R R + A R ME ER +R
Sbjct: 339 REKKRREEWDRLESIRLAEEEAELARRRALEKERIDREKAEEERK-TMERLERERARLER 397
Query: 583 ENSSPEE-PSQRYDTEEIENFDRKHEN*ERIXIEKGQKRLL*HKRHFFEYEKTSDAR 750
E E ++ +TE IE R+HE E IE+ ++ + +R E +K + R
Sbjct: 398 ERLEEERRQKEKAETERIERERREHERIEIERIERIKRERIERERREREEKKAEEDR 454
>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
molecule protein1, isoform a protein.
Length = 1480
Score = 33.5 bits (73), Expect = 0.21
Identities = 47/177 (26%), Positives = 72/177 (40%), Gaps = 4/177 (2%)
Frame = +1
Query: 232 RPDRHPHKRTLRIQYRRLGRDKKTRRNHY*RRGSGQRY--DPELLQVARNLLRQIFG*VQ 405
R DR + R + Q ++ + + R +R D E LQ R LLRQ Q
Sbjct: 285 RRDREDNARRILAQREHQEMERLREQQNLSERALAERERADKERLQQER-LLRQ-----Q 338
Query: 406 RHRPKN*HKN*CEQRRILHQET-LGR*RIEAGSALSA*NAHARRGFLMETRERYHEVDQR 582
R + + + E R+ +E L R R + A R ME ER +R
Sbjct: 339 REKKRREEWDRLESIRLAEEEAELARRRALEKERIDREKAEEERK-TMERLERERARLER 397
Query: 583 ENSSPEE-PSQRYDTEEIENFDRKHEN*ERIXIEKGQKRLL*HKRHFFEYEKTSDAR 750
E E ++ +TE IE R+HE E IE+ ++ + +R E +K + R
Sbjct: 398 ERLEEERRQKEKAETERIERERREHERIEIERIERIKRERIERERREREEKKAEEDR 454
>U61947-2|AAB03135.1| 498|Caenorhabditis elegans Hypothetical
protein C06G3.6 protein.
Length = 498
Score = 32.7 bits (71), Expect = 0.36
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 527 LDEDSSWKHVKDITKLIRGKTQVPKSLHNDMIQ-KKLKILTENMKIENELXSKKGKNDY 700
+ D +W+ +KD T++ G+ + + L ++ K L+ MK+EN+ K+ KN +
Sbjct: 129 MKSDKAWRVMKD-TEIAEGQLSLQELLDKQQLEIKSLQKDISEMKLENQCRKKEDKNSF 186
>Z81459-1|CAB03827.3| 731|Caenorhabditis elegans Hypothetical
protein C03H12.1 protein.
Length = 731
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +2
Query: 458 YIRRRLVAEELKLALLCPRKMHMLDEDSSWKHVKDITKLIRGKTQVPKSLHNDMI 622
YI+ + E + C + H D+S+ V + T++I KT+ PK +H D +
Sbjct: 480 YIKSNITRESIN----CLIRQHHNSADNSF--VTESTEIITTKTETPKDIHADAV 528
>Z79604-6|CAB97241.2| 731|Caenorhabditis elegans Hypothetical
protein C03H12.1 protein.
Length = 731
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +2
Query: 458 YIRRRLVAEELKLALLCPRKMHMLDEDSSWKHVKDITKLIRGKTQVPKSLHNDMI 622
YI+ + E + C + H D+S+ V + T++I KT+ PK +H D +
Sbjct: 480 YIKSNITRESIN----CLIRQHHNSADNSF--VTESTEIITTKTETPKDIHADAV 528
>U39652-5|AAV28338.1| 986|Caenorhabditis elegans Hypothetical
protein R07E4.1b protein.
Length = 986
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = +2
Query: 80 RLELLEEQLSPNKRA-TSRHYEFNMINNPPPKSS-YLKACFP 199
RLELL ++L+ + T YEF M N+P P+++ +LK+ P
Sbjct: 773 RLELLGDRLASRDGSDTEDEYEFVMSNDPNPRNNGFLKSDQP 814
>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical protein
R07E4.1a protein.
Length = 1122
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = +2
Query: 80 RLELLEEQLSPNKRA-TSRHYEFNMINNPPPKSS-YLKACFP 199
RLELL ++L+ + T YEF M N+P P+++ +LK+ P
Sbjct: 909 RLELLGDRLASRDGSDTEDEYEFVMSNDPNPRNNGFLKSDQP 950
>Z68108-2|CAA92135.1| 406|Caenorhabditis elegans Hypothetical
protein T05A10.3 protein.
Length = 406
Score = 28.3 bits (60), Expect = 7.8
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = +1
Query: 544 METRERYHEVDQRENSSPEEPSQRYDTEEIENFDRKHEN*ERIXIEKGQKRLL*HKRHFF 723
+E R E QR E +R ++E +RK E ++ ++ +++ HKR
Sbjct: 273 IEEIRRQEEEQQRIELERREEERRLESERRAEEERKREEEAKLQEQRRREQEDEHKRRME 332
Query: 724 EYEKTSDAR 750
EY + R
Sbjct: 333 EYHRREQER 341
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,363,929
Number of Sequences: 27780
Number of extensions: 377048
Number of successful extensions: 1231
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -