Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_G15
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    28   1.5  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    28   2.0  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   6.2  
SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr...    26   8.2  

>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 6/141 (4%)
 Frame = +2

Query: 296 VKPMKSF*KLSASLXDDAIRTE--FASKSRDLRSIKGVELKMANKV--YVHDGGKLD--E 457
           V P K+  K+  S   D   T   F S  +   S++ VE   A K+  +++ G  ++   
Sbjct: 58  VDPKKNSLKIKISDIRDVQHTSRYFRSSPKIRLSLRHVEKSWACKICTFINVGDPINPCR 117

Query: 458 NFAVVSRDVFNSDVQNIDFSKNTVAAKSINDWVEENTNNRIKDLVNPDSLSSATAGVLVN 637
           N  V +R        +  FS+    A +  ++ + NT       +  + L +     L+ 
Sbjct: 118 NCGVANRFTIIKPKSDARFSQGLCTACTFQNYPDLNTCE-----ICGNQLKNVDRNQLIQ 172

Query: 638 AIYFKGAWSSKFDERLTSDRD 700
            + F+G+ SSKF E + S+ D
Sbjct: 173 -LSFRGSGSSKFYEAIKSETD 192


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 362 FASKSRDLRSIKGVELKMANKVYVHDGGKLDE 457
           FA + ++L   KGV+L M +   +HDG  L +
Sbjct: 79  FALRMKELADFKGVDLLMVDTGDLHDGNGLSD 110


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 632 VNAIYFKGAWSSKFDERLTSDRDFYVSKDKTI 727
           V+A+ F+  W +    R T D DF   K KTI
Sbjct: 68  VSALKFEWNWQNLGISRYTKDCDFRSKKQKTI 99


>SPCC777.08c |||HbrB family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 521 NTVAAKSINDWVEENTNNRIKDLVNPDSLS 610
           +T +A SIN W+ +NT   I+ + N  SLS
Sbjct: 9   STSSASSIN-WIPKNTKTSIESVSNTISLS 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,199,500
Number of Sequences: 5004
Number of extensions: 62780
Number of successful extensions: 171
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)