Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_G11
(884 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces po... 44 4e-05
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 28 1.5
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po... 27 2.7
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo... 27 3.6
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 4.7
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce... 26 6.2
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 26 6.2
SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|c... 26 8.2
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 26 8.2
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc... 26 8.2
>SPAC8C9.16c |mug63||TLDc domain protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 188
Score = 43.6 bits (98), Expect = 4e-05
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Frame = +1
Query: 493 WSLAFSTSQHGFSLASMY----RKMQRVDSP---VLLVIQDTDNNVFGAMTSCALHPSEH 651
W +S G SL +MY ++ R P +L ++DTD +VFG L P+ H
Sbjct: 37 WKRIYSLQHDGASLQTMYLACEKEKARSGHPKGACILAVRDTDGDVFGVFIPDYLIPAPH 96
Query: 652 FYGTGESFLYSF 687
++G+ E+FL+ +
Sbjct: 97 YFGSEETFLWKY 108
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 28.3 bits (60), Expect = 1.5
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +2
Query: 671 RSSIRF-KGLRKTRARGLTXRXHADDSNKETDSDNX---SDTKKEXTNNRKRSKLXQVLG 838
+S+I F KGL T AR + H + + S+TKKE + R+ SKL + +G
Sbjct: 732 QSNIEFLKGLNATHARSTSQVSHTQRLQQSISTSLERVKSNTKKESNSPRQVSKLKRPIG 791
Query: 839 MDGR 850
+
Sbjct: 792 ASNK 795
>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 508
Score = 27.5 bits (58), Expect = 2.7
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 317 SEKVLSMSDELRRALYSSGASVDMEFLPPDLIGATEIFTMEH 442
S K+ + L+ + GA +D LPPDLI M+H
Sbjct: 55 SNKIQVNLNNLKAVESALGAEIDGAILPPDLIKTISTGDMDH 96
>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 132 IKNTSCQRLI*KSPTRLQGFVTKTLNDQNLK 40
+KN RLI K +L+ F TK+LND K
Sbjct: 6 LKNLVIPRLIVKHQFKLRSFSTKSLNDTKEK 36
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 505 FSTSQHGFSLASMYRKMQRVDSPVLLVIQ 591
F S HG+S+ ++ RKM +P +L+I+
Sbjct: 302 FRASFHGYSMYALERKMCNYHNPSILLIK 330
>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 512
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 261 GLKWFGSALRRPKGLQLSKARRFC 332
GL W +L P L +S+ RRFC
Sbjct: 28 GLGWKSPSLAEPFTLPISEIRRFC 51
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 713 RGLTXRXHADDSNKETDSDNXSDTKKEXTNNRKRSKL 823
R L+ ++DS+ SD+ D KK+ + + K S +
Sbjct: 264 RSLSSSPSSEDSDLSLSSDSDDDEKKQPSKSEKTSSM 300
>SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 449
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +2
Query: 275 RFSPTATERTSTFESEKVLSMSDELRRALYSSGASVDMEFLP 400
RF PT + EK S+SD + + + + A E++P
Sbjct: 137 RFLPTVSGEEGDLTEEKTTSLSDLIMQKINEAEARARGEYIP 178
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 568 SPVLLVIQDTDNNVFGAMTSCALHPSEHFY 657
SP+LL + + D + A+ C S+ FY
Sbjct: 644 SPILLAVYNPDTGAYEAVCKCMSGFSDQFY 673
>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 334
Score = 25.8 bits (54), Expect = 8.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 112 TLNLEITHTTARFCNQNTERPKS 44
T++ E+THT+ + + N RP S
Sbjct: 105 TVSSEVTHTSEGYADSNDSRPSS 127
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,136,152
Number of Sequences: 5004
Number of extensions: 55698
Number of successful extensions: 175
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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