Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_G11
(884 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0829 - 6254769-6254852,6254940-6255024,6255158-6255245,625... 48 1e-05
07_03_0171 + 14687791-14687898,14688465-14688550,14689474-146895... 44 1e-04
12_01_0371 - 2851186-2851491,2851582-2851765,2851967-2852156,285... 41 0.002
03_02_0308 - 7297228-7298008,7298495-7298576,7298612-7298669,729... 30 2.1
01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660 29 5.0
01_05_0760 - 24977608-24978708 29 6.6
12_01_0461 + 3618414-3618782,3619664-3619794,3620177-3620294,362... 28 8.7
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 28 8.7
>06_01_0829 -
6254769-6254852,6254940-6255024,6255158-6255245,
6255344-6255407,6255496-6255576,6256709-6256781,
6256871-6257385,6258168-6258284
Length = 368
Score = 48.0 bits (109), Expect = 1e-05
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +1
Query: 478 LRGYMWSLAFSTSQHGFSLASMYRKMQRVDSPVLLVIQDTDNNVFGAMTSCALHP--SEH 651
++G W L +ST +HG SL+++YR+ LL++ D VFG + L P +
Sbjct: 201 VQGRNWMLVYSTWRHGISLSTLYRRSMLCAGYSLLIVGDRKGAVFGGLVEAPLQPLIKKK 260
Query: 652 FYGTGESFLYS 684
+ GT F+++
Sbjct: 261 YQGTNNCFVFT 271
>07_03_0171 +
14687791-14687898,14688465-14688550,14689474-14689546,
14689661-14689741,14690010-14690073,14690673-14690760,
14690843-14690927,14692190-14692228
Length = 207
Score = 44.4 bits (100), Expect = 1e-04
Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Frame = +1
Query: 511 TSQHGFSLASMYRKMQRVDSPVLLVIQDTDNNVFGAMTSCALHPSE--HFYGTGESFLYS 684
T +HG SL +++R+ + + P LL++ D VFG + + L P+E + GT ++F+++
Sbjct: 66 TWKHGTSLRTLFRRSENLQGPCLLIVGDMRGAVFGGLLNGPLRPTEKRKYQGTNQTFVFT 125
>12_01_0371 -
2851186-2851491,2851582-2851765,2851967-2852156,
2853375-2853613,2853862-2853947,2854720-2854827,
2854929-2855031,2855152-2855213
Length = 425
Score = 40.7 bits (91), Expect = 0.002
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +1
Query: 493 WSLAFSTSQHGFSLASMYRKMQRVDSPVLLVIQDTDNNVFGAMTSCALHPSEHFYGTGES 672
W L + +S HG S + + D+ +++++DT+ VFG S FYG ++
Sbjct: 242 WRLLYHSSLHGQSFNTFLGNVTNGDAQTVIIVKDTEGFVFGGYASHPWERHSDFYGDMKT 301
Query: 673 FLY 681
FL+
Sbjct: 302 FLF 304
>03_02_0308 -
7297228-7298008,7298495-7298576,7298612-7298669,
7298723-7298835,7298924-7299034,7299480-7299597,
7299706-7299809,7300570-7300665,7301806-7302307
Length = 654
Score = 30.3 bits (65), Expect = 2.1
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +3
Query: 348 SDARFTR--RGPPSTWSSCRPTSLAPRKYSPWNTGXKLCS-VLPARAQGVH 491
S +RFT PP W RP ++A SP + G S VLPA A G H
Sbjct: 437 SVSRFTTPLTPPPMPWGPPRPANMARHSSSPKHFGYAPNSGVLPAPAIGAH 487
>01_01_1086 + 8539821-8540024,8540132-8540237,8540635-8540660
Length = 111
Score = 29.1 bits (62), Expect = 5.0
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = -3
Query: 627 RRHGPK-HVVIGVLYDEEHGAVD 562
+ HGP H ++G +D+EHG +D
Sbjct: 89 KNHGPTWHCIVGRNFDKEHGGID 111
>01_05_0760 - 24977608-24978708
Length = 366
Score = 28.7 bits (61), Expect = 6.6
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 273 FGSALRRPKGLQLSKARRFCR*AMSSDARFTRRGPPSTWSSCRPTSLAPRKYS 431
+ S+L G + S+ARR R SS + R P S+W R AP +YS
Sbjct: 129 YSSSLPTKDGRKQSRARRKAR---SSPSTSRRHCPSSSWGRARLPRGAPGQYS 178
>12_01_0461 +
3618414-3618782,3619664-3619794,3620177-3620294,
3620602-3620654,3620758-3620807,3620912-3621010,
3621511-3621620,3621773-3621900,3622071-3622161,
3622610-3622693,3622863-3623083,3623449-3623527,
3624134-3624283,3624326-3624470,3624604-3624983,
3625096-3625197
Length = 769
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 671 DSPVP*KCSDGCRAHDVMAPNTLLSVSCMTRSTGLSTR 558
D PVP KC C +H +A N S+ C S G ++
Sbjct: 344 DPPVPDKCDRLCVSHIEVAWNLAHSIGCSVFSGGSDSK 381
>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 698 RKTRARGLTXRXHADDSNKETDSDNXSDTKKEXTNNRKRSK 820
+K ++R R H+ S+ E+DSD+ D K +RKR +
Sbjct: 1113 KKLKSRKHRRRGHSS-SDSESDSDSDGDRKHRKRKDRKRHR 1152
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,001,505
Number of Sequences: 37544
Number of extensions: 383151
Number of successful extensions: 1103
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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