Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_G10
         (1017 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.79 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.2  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.5 bits (63), Expect = 0.79
 Identities = 20/70 (28%), Positives = 21/70 (30%), Gaps = 3/70 (4%)
 Frame = +1

Query: 739 KXAPQKXXPXXXXKXXPPFRXGFXPXXGPPXPPXXXPXTXSSXXXFQXG---GXPPPXRX 909
           K  P    P    +  PP   G      PP PP        S      G     PPP R 
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRS 368

Query: 910 YKKTXXXPPP 939
              T   PPP
Sbjct: 369 APSTGRQPPP 378



 Score = 29.5 bits (63), Expect = 0.79
 Identities = 15/51 (29%), Positives = 16/51 (31%)
 Frame = +3

Query: 747 PPKXXPXXPXKXXPPFSXGVFXXXXPPPPPXXXXXNXFXXPXFSXGGXTPP 899
           PP   P    +  PP   G      PPPPP          P    G   PP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPP 362


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +1

Query: 883 GGXPPPXRXYKKTXXXPPPRXPPP 954
           GG PPP          PPP  PPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPP 782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,788,329
Number of Sequences: 5004
Number of extensions: 42123
Number of successful extensions: 96
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 529254290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)