Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_G04
(891 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 89 6e-19
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc... 50 3e-07
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||... 30 0.38
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 29 0.67
SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc... 27 2.7
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 27 4.7
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos... 26 6.3
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 26 6.3
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos... 26 8.3
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 26 8.3
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 89.4 bits (212), Expect = 6e-19
Identities = 33/60 (55%), Positives = 44/60 (73%)
Frame = +1
Query: 382 IIRFEMPYNIWCDGCNNHIGMGVRYNAEKKKIGMYYTTPVYQFRMKCHLCDNHFEIKTDP 561
+IRFEMP+ +WC+ C N I G R+NA KK+IG YYTT ++ F +KCHLC N ++ TDP
Sbjct: 22 VIRFEMPFPVWCNNCENIIQQGTRFNAVKKEIGSYYTTKIWSFSLKCHLCSNPIDVHTDP 81
Score = 37.9 bits (84), Expect = 0.002
Identities = 25/97 (25%), Positives = 45/97 (46%)
Frame = +2
Query: 566 NLDYVIVSGARRQENRWDPTENGQIVPETKEAQKKLFDDAMFRLEHKKGDEDLSKTDKPR 745
N +Y++ SG RR+ D E P E +K+ DA+ LE + + K +
Sbjct: 83 NTEYIVASGGRRKIEPQDINER----PAKAENDEKVPSDAIEALETQLTQQKSEKHNSSV 138
Query: 746 LGRLVGRNEGVWXDDYEANCALRRXLGKEGKSLRNPQ 856
+ + +NE +W D + ++ LR+ +E K + Q
Sbjct: 139 INFIYEKNERLWSDPFVSSQRLRKQF-RERKKIEKKQ 174
>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 50.4 bits (115), Expect = 3e-07
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = +1
Query: 283 IPPXYDPKVGGLNKFQGTHALRERARKLHMGILIIRFEMPYNIWCDGCNNHIGMGVRYNA 462
IPP YDP + K +++ + + G L +R P+++ C C +I G ++NA
Sbjct: 11 IPPDYDPSIRPPKK-------KKKFQGPNGGKLTVRLMTPFSMRCHTCGEYIYKGKKFNA 63
Query: 463 EKKKIG-MYYTTPVYQFRMKCHLCDNHFEIKTDP 561
K+K G Y++ + +F ++C C TDP
Sbjct: 64 RKEKTGEKYFSIDILRFYIRCTRCAAEITFITDP 97
>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 625
Score = 30.3 bits (65), Expect = 0.38
Identities = 21/85 (24%), Positives = 41/85 (48%)
Frame = -2
Query: 515 ILNWYTGVV*YIPIFFFSALYLTPMPIWLLHPSHQMLYGISKRMIRIPMWSFLARSLKAW 336
IL G+ +I +FF A + +P+W + ++ + + + WS+L S+ A+
Sbjct: 407 ILGMVVGICFFISLFF--APIFSSIPVWATGSTLVLVGSMMMKSTTLINWSYLGDSIPAF 464
Query: 335 VPWNLLSPPTFGS*XGGIV*ILTFA 261
+ L+ P T+ G I I+ +A
Sbjct: 465 ITIALM-PFTYSIAYGLIAGIICYA 488
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 29.5 bits (63), Expect = 0.67
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = -2
Query: 470 FFSALYLTPMPI--WLLHPSHQMLYGISKRMIRIPMWSFLARSLKAWVP 330
F + LY P I WL+HP+H +L + ++ W ++ + L A +P
Sbjct: 636 FLTKLYTFPFTIITWLMHPTHLLLVVMFSMLVL--QWWYMQQILHAELP 682
>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 618 SHLFSCLRAPDTIT*SKFXWIS 553
SH+F + +PD +T F WIS
Sbjct: 389 SHVFYAIASPDIVTNEDFFWIS 410
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +2
Query: 626 ENGQIVPETKEAQKKLFDDAMFRLEHKKGDEDLSKTDK 739
EN ++V E KE K DA+ EH D++ SKTDK
Sbjct: 431 ENNEVVTEKKETDIK--SDAV---EHSIKDKEDSKTDK 463
>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
Vas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 950
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 200 F*RSTKLTRIHGLLNFYSRNYL 135
F RS + HGLL+F +RNY+
Sbjct: 4 FQRSFSSRKAHGLLSFKNRNYI 25
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +1
Query: 211 LNTSINDATVTNPQWANAKVRIYTIPPXYDPKVGG 315
LNT + +T+ W +AK + Y P GG
Sbjct: 187 LNTDLTAEMITSRSWESAKFKSYNFAAEGIPPAGG 221
>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 785
Score = 25.8 bits (54), Expect = 8.3
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Frame = -2
Query: 434 WLLHPSHQMLYGISKRMIR--IPMWSFLARSLKAWVPWNLLSPPT 306
W + P LY I P + F A SL AWV W + PT
Sbjct: 257 WRISPFRFFLYVFIASFIWNWFPSYIFQALSLFAWVTWIRPNSPT 301
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/43 (23%), Positives = 21/43 (48%)
Frame = +1
Query: 298 DPKVGGLNKFQGTHALRERARKLHMGILIIRFEMPYNIWCDGC 426
D +G +N + AL + + G+ +++ P ++W GC
Sbjct: 476 DSHIGTIN-YMAPEALTDMNAHTNSGVKLVKLGRPSDVWSLGC 517
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,752,763
Number of Sequences: 5004
Number of extensions: 83276
Number of successful extensions: 228
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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