Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_G04
(891 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0693 + 13006243-13006245,13006439-13006501,13006608-130066... 122 5e-28
01_05_0524 + 22925354-22926229 50 2e-06
01_05_0525 + 22928295-22928492,22929435-22929584,22929679-229298... 42 5e-04
03_01_0363 + 2827990-2828055,2828215-2829306,2829715-2829837,282... 30 2.1
11_01_0313 - 2328495-2328936,2330562-2330881 29 3.8
07_03_1087 - 23868787-23869325,23870052-23870181 29 5.0
04_02_0034 - 8999618-9000358,9001439-9001618,9001666-9003621,900... 29 6.6
08_02_1521 + 27650357-27651064 28 8.7
08_02_0593 + 19078264-19078609,19078724-19082256 28 8.7
03_04_0053 + 16873735-16873927,16874011-16874162,16874286-168743... 28 8.7
>02_02_0693 +
13006243-13006245,13006439-13006501,13006608-13006687,
13007964-13008072,13009027-13009074,13011044-13011203,
13011295-13011458,13011549-13011902
Length = 326
Score = 122 bits (293), Expect = 5e-28
Identities = 61/118 (51%), Positives = 73/118 (61%), Gaps = 16/118 (13%)
Frame = +1
Query: 256 ANAKVRIYTIPPXYDPKVGGLNKFQGTHALRERARKLHMGILIIRFEMPYNIWCDGCNNH 435
A A+ + PP + PK GGLNKF G HALRERARKL GILIIRFEMP+NIWC GCN+
Sbjct: 5 AAARADNFYYPPEWSPKKGGLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSM 64
Query: 436 IGMGVRYNAEKKKIGMYYTTP----------------VYQFRMKCHLCDNHFEIKTDP 561
I GVR+NAEKK++G YY+T ++ F MK C I+TDP
Sbjct: 65 IAKGVRFNAEKKQVGNYYSTKDQGSPNRFGWGYRHPMIWSFTMKSPCCKQEIVIQTDP 122
Score = 52.4 bits (120), Expect = 5e-07
Identities = 32/91 (35%), Positives = 49/91 (53%)
Frame = +2
Query: 566 NLDYVIVSGARRQENRWDPTENGQIVPETKEAQKKLFDDAMFRLEHKKGDEDLSKTDKPR 745
N +YVI+SGA+R+ +D + ++ E + KL D M++LEH++ D K +P
Sbjct: 124 NTEYVIISGAQRKTEDYDVEDAETLLLPADEERDKLADP-MYKLEHQEEDLKKKKEAEPV 182
Query: 746 LGRLVGRNEGVWXDDYEANCALRRXLGKEGK 838
L RL ++ DDY N ALR L + K
Sbjct: 183 LVRLQRLSDSRHSDDYALNRALRDRLRSQKK 213
>01_05_0524 + 22925354-22926229
Length = 291
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Frame = +1
Query: 358 RKLHMGILIIRFEMPYNIWCDGCNNHIGMGVRYNAEKKKI-GMYY--TTPVYQFRMKCHL 528
R+ H +++R +P + C C +IG G ++N+ K+ + G Y V++F ++C
Sbjct: 23 RRQHKKQMVVRMMLPMTVRCAACGEYIGRGTKFNSRKEDVAGERYLGAVQVFRFYIRCSR 82
Query: 529 CDNHFEIKTDPXELGLCDSVRSSETR 606
C +TDP G ++ S TR
Sbjct: 83 CSAEIVFRTDPASAGY--ALESGATR 106
>01_05_0525 +
22928295-22928492,22929435-22929584,22929679-22929813,
22929914-22929979,22931704-22931793,22932414-22932495,
22932703-22932908
Length = 308
Score = 42.3 bits (95), Expect = 5e-04
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 385 IRFEMPYNIWCDGCNNHIGMGVRYNAEKKKIG--MYYTTPVYQFRMKCHLCDNHFEIKTD 558
+R +P +I C C +I G ++N+ K+ + Y +++F KC C KTD
Sbjct: 33 VRMMLPMSIRCGTCGTYIYKGTKFNSRKEDVEGEKYLGIQIFRFYFKCTKCSAEITFKTD 92
Query: 559 P 561
P
Sbjct: 93 P 93
>03_01_0363 +
2827990-2828055,2828215-2829306,2829715-2829837,
2829994-2830110,2830248-2830429,2830558-2830744,
2830846-2831055,2831177-2831305,2832179-2832247,
2832751-2832873,2832957-2833007,2833101-2833250
Length = 832
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 572 DYVIVSGARRQENRWDPTENGQIVPETKEAQ-KKLFD-DAMFRLEHKKGDED 721
D+++ R RWD TE + E +E + ++ F+ D ++HK G +D
Sbjct: 565 DFIVTGSHDRSIRRWDRTEEQLFIEEEQEKRLEETFEADLDSAMDHKYGQKD 616
>11_01_0313 - 2328495-2328936,2330562-2330881
Length = 253
Score = 29.5 bits (63), Expect = 3.8
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -2
Query: 707 SCVLV*TWHRQTTFSVLLWFPEQSDRSLWDP 615
+C+ V T H T VL+ P+QS+R+L+ P
Sbjct: 186 NCLFVGTGHSPRTSQVLINEPDQSNRTLYSP 216
>07_03_1087 - 23868787-23869325,23870052-23870181
Length = 222
Score = 29.1 bits (62), Expect = 5.0
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +2
Query: 719 DLSKTDKPRLGRLVGRNEGVWXDDYEANCALRRXLGKE 832
D S++ R EGVW + EANC L L E
Sbjct: 108 DTSRSRSSGSPRYTAHGEGVWFIEAEANCLLEEALNLE 145
>04_02_0034 - 8999618-9000358,9001439-9001618,9001666-9003621,
9004647-9004786,9004871-9005282,9006399-9006638
Length = 1222
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/68 (26%), Positives = 34/68 (50%)
Frame = +2
Query: 527 CVIITLKSKLIQXNLDYVIVSGARRQENRWDPTENGQIVPETKEAQKKLFDDAMFRLEHK 706
C ++ +K + N+ V V + + G+I ++EA+ D+A+FR E K
Sbjct: 889 CTMVRIKYRPNPQNIQVVDVEPPKTDSLEPLLEDAGKITCTSQEARTAGSDEAIFRTEIK 948
Query: 707 KGDEDLSK 730
+G E+ +K
Sbjct: 949 EGVEEEAK 956
>08_02_1521 + 27650357-27651064
Length = 235
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 624 QRTVRLFRKPKKHRKSCLTMPCSD*NTRRVMRI 722
Q +RL +K KKH K LT SD R++++
Sbjct: 121 QSYIRLVKKAKKHSKKTLTKVVSDKEDCRIVKL 153
>08_02_0593 + 19078264-19078609,19078724-19082256
Length = 1292
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 653 KEAQKKLFDDAMFRLEHKKGDEDLSK 730
KEA K+ D+ +F + H DED SK
Sbjct: 1155 KEADKRTNDEYLFDISHNCDDEDCSK 1180
>03_04_0053 +
16873735-16873927,16874011-16874162,16874286-16874380,
16874704-16874818,16875054-16875343,16875436-16875585,
16876478-16876598,16876671-16876942,16877466-16877937
Length = 619
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +2
Query: 650 TKEAQKKLFDDAMFRLEHKKGDEDLSKTDKPRLGRLVGRNEGVWXDDYEANCAL--RRXL 823
T+ +K L ++ +FR++H G E + R LV E +W +Y N L
Sbjct: 268 TRNLKKYLAEEQIFRIDHYLGKELVENLSVLRFSNLV--FEPLWSRNYIRNVQLIFSEDF 325
Query: 824 GKEGK 838
G EG+
Sbjct: 326 GTEGR 330
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,622,878
Number of Sequences: 37544
Number of extensions: 511198
Number of successful extensions: 1184
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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