Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_G03
(912 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 38 0.003
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.17
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.30
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.69
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.92
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 27 2.8
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.8
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 26 6.5
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 37.5 bits (83), Expect = 0.003
Identities = 34/147 (23%), Positives = 36/147 (24%), Gaps = 5/147 (3%)
Frame = +2
Query: 482 KSPXPPGXGXGXXGPXPXPPPXXPGPXXXGGXXXXPPPXRGXXGXPXXXGXTPEKTFXXK 661
K P G GP P PP P P P P P T
Sbjct: 947 KLTRPSNDGRKASGPRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAA 1006
Query: 662 XXKR----PKXXKRPVXXGFPQXAPPPRXXPPKXXXPXXKGGXNP-PREIKKXXGXSPPX 826
R PK + P PP P P P+ PP
Sbjct: 1007 PLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPV 1066
Query: 827 XAPPRXPPPXPXPXXXTXTPXPXPXPP 907
AP P P P P P PP
Sbjct: 1067 PAPSSEIPSIPAPSGAPPVPAPSGIPP 1093
Score = 32.3 bits (70), Expect = 0.098
Identities = 36/143 (25%), Positives = 39/143 (27%), Gaps = 5/143 (3%)
Frame = +2
Query: 494 PPGXGXGXXGPXPXPPPXXPGPXXXGGXXXXPPPXRGXXGX----PXXXGXTPEKT-FXX 658
PP P P P P P G PPP P G P
Sbjct: 1032 PPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGI 1091
Query: 659 KXXKRPKXXKRPVXXGFPQXAPPPRXXPPKXXXPXXKGGXNPPREIKKXXGXSPPXXAPP 838
+P PV P A PP P P K P + G +PP P
Sbjct: 1092 PPVPKPSVAAPPVPK--PSVAVPP-VPAPSGAPPVPKPSVAAP-PVPVPSG-APPVPKPS 1146
Query: 839 RXPPPXPXPXXXTXTPXPXPXPP 907
PP P P P P P
Sbjct: 1147 VAAPPVPAPSGAPPVPKPSVAAP 1169
Score = 31.5 bits (68), Expect = 0.17
Identities = 30/128 (23%), Positives = 31/128 (24%)
Frame = +2
Query: 524 PXPXPPPXXPGPXXXGGXXXXPPPXRGXXGXPXXXGXTPEKTFXXKXXKRPKXXKRPVXX 703
P P P P G P P P G P P P
Sbjct: 1103 PVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVP 1162
Query: 704 GFPQXAPPPRXXPPKXXXPXXKGGXNPPREIKKXXGXSPPXXAPPRXPPPXPXPXXXTXT 883
P A PP P P K P +PP P PP P P
Sbjct: 1163 K-PSVAAPPVPAPSSGIPPVPKPAAGVPPV--PPPSEAPPVPKPSVGVPPVPPPSTAPPV 1219
Query: 884 PXPXPXPP 907
P P P
Sbjct: 1220 PTPSAGLP 1227
Score = 28.7 bits (61), Expect = 1.2
Identities = 33/139 (23%), Positives = 35/139 (25%), Gaps = 2/139 (1%)
Frame = +2
Query: 494 PPGXGXGXXGPXPXPPPXXPGPXXXGGXXXXPPPXRGXXGXPXXXGX--TPEKTFXXKXX 667
PP P P P P G P P P G P+ +
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPV 1171
Query: 668 KRPKXXKRPVXXGFPQXAPPPRXXPPKXXXPXXKGGXNPPREIKKXXGXSPPXXAPPRXP 847
P PV P PP PP P K P PP APP
Sbjct: 1172 PAPSSGIPPVPK--PAAGVPP-VPPPSEAPPVPKPSVGVPP-------VPPPSTAPPVPT 1221
Query: 848 PPXPXPXXXTXTPXPXPXP 904
P P T P P
Sbjct: 1222 PSAGLPPVPVPTAKAPPVP 1240
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.5 bits (68), Expect = 0.17
Identities = 15/38 (39%), Positives = 15/38 (39%)
Frame = +2
Query: 482 KSPXPPGXGXGXXGPXPXPPPXXPGPXXXGGXXXXPPP 595
KSP PP P P P P P GG PPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767
Score = 29.1 bits (62), Expect = 0.92
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +2
Query: 488 PXPPGXGXGXXGPXPXPPPXXPGPXXXGGXXXXPP 592
P PP G G P PPP P GG P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 818 PPXXAPPRXPPPXPXPXXXTXTPXPXPXPP 907
PP PPP P P P P P PP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 27.9 bits (59), Expect = 2.1
Identities = 18/48 (37%), Positives = 18/48 (37%)
Frame = +2
Query: 710 PQXAPPPRXXPPKXXXPXXKGGXNPPREIKKXXGXSPPXXAPPRXPPP 853
P AP P PP GG PP G PP PP PPP
Sbjct: 742 PTPAPAPIPVPPPAPI---MGGPPPPPPPPGVAGAGPP---PPPPPPP 783
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/46 (32%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Frame = +2
Query: 782 PPREIKKXXGXSPPXXAPPRX----PPPXPXPXXXTXTPXPXPXPP 907
PP I +P PP PPP P P P P PP
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +2
Query: 845 PPPXPXPXXXTXTPXPXPXPP 907
PPP P T P P P PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPP 753
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/38 (31%), Positives = 13/38 (34%)
Frame = +2
Query: 530 PXPPPXXPGPXXXGGXXXXPPPXRGXXGXPXXXGXTPE 643
P PPP PG G PPP G P+
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQ 798
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = +2
Query: 815 SPPXXAPPRXPPPXPXPXXXTXTPXPXPXPP 907
+P PP PPP P P P P PP
Sbjct: 755 APIMGGPP--PPPPPPGVAGAGPPPPPPPPP 783
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/24 (41%), Positives = 10/24 (41%)
Frame = +2
Query: 473 GXXKSPXPPGXGXGXXGPXPXPPP 544
G P PPG P P PPP
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPPP 783
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.7 bits (66), Expect = 0.30
Identities = 22/81 (27%), Positives = 28/81 (34%), Gaps = 2/81 (2%)
Frame = +2
Query: 671 RPKXXKRPVXXGFPQXAPPPRXXPPKXXXPXXKGGXNPPREIKKXXGXSPPXXAPP--RX 844
R K P+ G + PP PP+ G P + + PP AP R
Sbjct: 319 RRNRGKPPIGNGSSNSSLPPPPPPPRSNAA---GSIPLPPQGRSAPPPPPPRSAPSTGRQ 375
Query: 845 PPPXPXPXXXTXTPXPXPXPP 907
PPP + P P P P
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIP 396
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/56 (26%), Positives = 16/56 (28%)
Frame = +2
Query: 740 PPKXXXPXXKGGXNPPREIKKXXGXSPPXXAPPRXPPPXPXPXXXTXTPXPXPXPP 907
PP P + PP PP PPR P P P PP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 27.5 bits (58), Expect = 2.8
Identities = 29/124 (23%), Positives = 30/124 (24%)
Frame = +2
Query: 536 PPPXXPGPXXXGGXXXXPPPXRGXXGXPXXXGXTPEKTFXXKXXKRPKXXKRPVXXGFPQ 715
PPP P G PP R P P + P P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRS-APSTGRQPPPLSSSRAVSNPPA---PP 392
Query: 716 XAPPPRXXPPKXXXPXXKGGXNPPREIKKXXGXSPPXXAPPRXPPPXPXPXXXTXTPXPX 895
A P R P PP S P PP PP P P
Sbjct: 393 PAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLP-----MGAPAAP 447
Query: 896 PXPP 907
P PP
Sbjct: 448 PLPP 451
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 29.5 bits (63), Expect = 0.69
Identities = 24/69 (34%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Frame = -1
Query: 906 GGXGXGXGVXVXXXGXGXGGGXRGGAXXGGEXPXXFLISRGGF-XPPXXLGXXFLGGXXR 730
GG G G G G G GG G P F GGF P G LGG
Sbjct: 198 GGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGGG-LGGFGG 256
Query: 729 GGGAXWGXP 703
G G G P
Sbjct: 257 GPGGFGGGP 265
Score = 26.6 bits (56), Expect = 4.9
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -1
Query: 552 GXXGGGXGXGPXXPXPXPGGXG 487
G GG G G P P PGG G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFG 208
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.1 bits (62), Expect = 0.92
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +2
Query: 833 PPRXPPPXPXPXXXTXTPXPXPXPP 907
PP PPP P P P P PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPP 29
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +2
Query: 833 PPRXPPPXPXPXXXTXTPXPXPXPP 907
P PPP P P + P P PP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 26.6 bits (56), Expect = 4.9
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +2
Query: 818 PPXXAPPRXPPPXPXP 865
PP PP PPP P P
Sbjct: 15 PPGFEPPSQPPPPPPP 30
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/37 (32%), Positives = 14/37 (37%)
Frame = +2
Query: 710 PQXAPPPRXXPPKXXXPXXKGGXNPPREIKKXXGXSP 820
P PPP PP P PP +KK +P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41
Score = 22.6 bits (46), Expect(2) = 4.3
Identities = 9/24 (37%), Positives = 10/24 (41%)
Frame = +1
Query: 814 FPPXXXPPXGPPPXSPTXXRNXDP 885
F P PP PPP +N P
Sbjct: 18 FEPPSQPPPPPPPGYVKKRKNKTP 41
Score = 22.2 bits (45), Expect(2) = 4.3
Identities = 10/17 (58%), Positives = 10/17 (58%), Gaps = 2/17 (11%)
Frame = +1
Query: 703 GXPPXGPPPP--XXPSQ 747
G PP PPPP PSQ
Sbjct: 7 GNPPPPPPPPGFEPPSQ 23
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/45 (28%), Positives = 14/45 (31%)
Frame = +2
Query: 758 PXXKGGXNPPREIKKXXGXSPPXXAPPRXPPPXPXPXXXTXTPXP 892
P + PPR S PPR P P P P P
Sbjct: 2 PRRRSAAPPPRRAAPARSASTAAALPPRTMAPPPAPSRVQQAPPP 46
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = +2
Query: 818 PPXXAPPRXPPPXPXPXXXTXTPXPXPXPP 907
PP APPR P P P + P P PP
Sbjct: 139 PPTSAPPRPSIPPPSP--ASAPPIPSKAPP 166
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 26.2 bits (55), Expect = 6.5
Identities = 17/44 (38%), Positives = 18/44 (40%)
Frame = -1
Query: 909 QGGXGXGXGVXVXXXGXGXGGGXRGGAXXGGEXPXXFLISRGGF 778
+GG G G G GGG RGG G SRGGF
Sbjct: 144 RGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGG-----SRGGF 182
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.146 0.494
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,907,689
Number of Sequences: 5004
Number of extensions: 26719
Number of successful extensions: 164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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