Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_G02
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    27   2.7  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   4.7  
SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   8.3  

>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/73 (21%), Positives = 31/73 (42%)
 Frame = +2

Query: 578 SVIGMPTCSIEQAEAVRQYYAAFPALKKGXVSPFAVLSASPCLXVXRLSPEVXAKMQXXI 757
           S   +P+ ++  ++ V++     P   +   SP   +S+SP +    LSP    K    +
Sbjct: 573 SPFNVPSFTVSSSDQVQKKKGNVPNAIETDSSPSDTISSSPTVRAVNLSPSKNQKPPKIL 632

Query: 758 VSVXXIGAXRNKK 796
             +  I +   KK
Sbjct: 633 TKIPDIFSKAGKK 645


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +2

Query: 476  LHHLIPTVCIQEHNLGNIVDQLCTSLQDIKDHEDSVIGMPTCSIEQA 616
            L+ LI  + I +HN  N    L  ++ + K H   ++G+    +++A
Sbjct: 2380 LYSLIRLIFISQHNGKNPYYDLIVNISENKQHRADIVGLLLYILQEA 2426


>SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = +2

Query: 449 VKITSTHSTLHHLIPTVCIQEHNLGNIVDQLCTSLQDIKDHEDSV--IGMPTCSIEQAEA 622
           +K+T+ H T   ++  V   EHNL   ++Q+   +    D  +    +G    ++ +A+ 
Sbjct: 134 LKVTNNHITHATIVGQVSGSEHNLSTAIEQVDVIVNYFYDSSEKFLELGNKVQTLGKAKN 193

Query: 623 VRQYYAAFPALKKGXV 670
            + +   + +  K  V
Sbjct: 194 KKHWLGVYQSFGKASV 209


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,335,290
Number of Sequences: 5004
Number of extensions: 66296
Number of successful extensions: 141
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)