Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_F24
(889 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyc... 109 5e-25
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch... 35 0.013
SPCC1620.01c |lsm2||U6 snRNP-associated protein core protein|Sch... 32 0.095
SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces... 31 0.29
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 30 0.51
SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein Smf1|Schizosac... 29 0.88
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1... 29 1.2
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar... 28 2.0
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha... 27 2.7
SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3 |Schizosacch... 27 2.7
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 27 3.6
SPBC1348.06c |||conserved fungal protein|Schizosaccharomyces pom... 26 6.2
SPBPB2B2.15 |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.2
SPAC977.05c |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.2
>SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 117
Score = 109 bits (262), Expect = 5e-25
Identities = 51/66 (77%), Positives = 61/66 (92%)
Frame = +1
Query: 118 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 297
MKLVRFLMKL++ETV+IELKNG++VHGTIT VD+ MNTHLKAVK+T+K RE + +ETLSI
Sbjct: 1 MKLVRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREPVPVETLSI 60
Query: 298 RGNNIR 315
RGNNIR
Sbjct: 61 RGNNIR 66
>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 35.1 bits (77), Expect = 0.013
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 160 VTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREE-LQLETLSIRGNNIR 315
+ +ELKNG +G + D MN L+ V T+ + ++ +L IRGNNI+
Sbjct: 15 ILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIK 67
>SPCC1620.01c |lsm2||U6 snRNP-associated protein core
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 96
Score = 32.3 bits (70), Expect = 0.095
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +1
Query: 118 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKV--TLKNREELQLETL 291
M F L VT+ELKN + G + VD +N L+ + V K ++ L
Sbjct: 1 MLFYSFFKTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLENISVVDASKYPHMAAVKDL 60
Query: 292 SIRGNNIR 315
IRG+ +R
Sbjct: 61 FIRGSVVR 68
>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 77
Score = 30.7 bits (66), Expect = 0.29
Identities = 15/59 (25%), Positives = 32/59 (54%)
Frame = +1
Query: 136 LMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGNNI 312
L K V ++L V+G + G D+ +N L+ + E++++ +++IRGN++
Sbjct: 9 LKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVKIGSVAIRGNSV 67
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 29.9 bits (64), Expect = 0.51
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 139 MKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLK 261
++LSHE EL+ SV+ + VD+ N+H +++ V L+
Sbjct: 208 IRLSHEAHVAELETISVILYQLAKVDLFQNSHFESLLVMLR 248
>SPBC3E7.14 |smf1|SPBC4F6.01|Sm snRNP core protein
Smf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 78
Score = 29.1 bits (62), Expect = 0.88
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +1
Query: 133 FLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGNNI 312
FL L + V + LK G GT+ VD MN L + + + L + IR NN+
Sbjct: 11 FLQGLIGKPVLVRLKWGQEYKGTLQSVDSYMNLQLLNAEELVDGVKTGDLGEILIRCNNV 70
>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 28.7 bits (61), Expect = 1.2
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -3
Query: 278 CSSSRFFNVTFTAFKCVFIATSTPVIVP*TTLPFFNSIVTVSWLSFIKNL 129
C+ FF F F VF+A +PV+ TT F S V VS ++ I +
Sbjct: 426 CAVILFFMGLFAKFAAVFVAIPSPVLGGMTT--FLFSSVAVSGIAIISQI 473
>SPCC1393.08 |||transcription factor, zf-GATA type
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 27.9 bits (59), Expect = 2.0
Identities = 20/63 (31%), Positives = 29/63 (46%)
Frame = -3
Query: 587 NKKHHENLIQSQISDLTYCDQVWLKIRFLSTGVRDLGLHDRLWGLRGHLGLCHDHLWRRR 408
+ K ENL+ + S +W K R T GL+ RL G +GL + + RRR
Sbjct: 410 SSKALENLVCANCSSTK--TSLWRKDRHGQTVCNACGLYARLHGHNRPIGLKKNKITRRR 467
Query: 407 RAQ 399
R +
Sbjct: 468 RGK 470
>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 75
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +1
Query: 133 FLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGNNI 312
FL K+ + V I L +G G ++ +D MN L+ + + ++ IRGNN+
Sbjct: 8 FLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIRGNNV 67
>SPBC887.03c |noc3||Noc2p-Noc3p complex subunit Noc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 747
Score = 27.5 bits (58), Expect = 2.7
Identities = 19/62 (30%), Positives = 32/62 (51%)
Frame = +1
Query: 28 YRESLKILDALSRTDAVICFHDKLVNKSSRMKLVRFLMKLSHETVTIELKNGSVVHGTIT 207
Y+E+ KI + DAVI DK +S +K++ F+ T++LK G ++ +
Sbjct: 460 YKETKKITQEMKEADAVITAQDKEKYQSEILKII-FITYFK----TLQLK-GKLIGNALE 513
Query: 208 GV 213
GV
Sbjct: 514 GV 515
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +1
Query: 598 TVFMLNTIIKLQ*LLANCY*KVLWSFSLNKMFSWTTFYT 714
T+F++N I + N + W FS+ + WT Y+
Sbjct: 1224 TIFVINIFILMNQERLNLISLITWMFSIGVFWIWTFIYS 1262
>SPBC1348.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 203
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = -3
Query: 308 LFPRILKVSNCSSSRFFNVTFTAFKCVFIATSTPVIVP*TTLPFFNSIVT 159
L PR+ ++ ++ F +TFT ++ T P + +PF N++ +
Sbjct: 78 LIPRLFTIAENDTANFTPLTFT----TYLKTCNPQSIENAMIPFVNTVTS 123
>SPBPB2B2.15 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 203
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = -3
Query: 308 LFPRILKVSNCSSSRFFNVTFTAFKCVFIATSTPVIVP*TTLPFFNSIVT 159
L PR+ ++ ++ F +TFT ++ T P + +PF N++ +
Sbjct: 78 LIPRLFTIAENDTANFTPLTFT----TYLKTCNPQSIENAMIPFVNTVTS 123
>SPAC977.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 204
Score = 26.2 bits (55), Expect = 6.2
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = -3
Query: 308 LFPRILKVSNCSSSRFFNVTFTAFKCVFIATSTPVIVP*TTLPFFNSIVT 159
L PR+ ++ ++ F +TFT ++ T P + +PF N++ +
Sbjct: 79 LIPRLFTIAENDTANFTPLTFT----TYLKTCNPQSIENAMIPFVNTVTS 124
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,861,150
Number of Sequences: 5004
Number of extensions: 51634
Number of successful extensions: 110
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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