Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_F24
         (889 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0403 - 22622014-22622075,22622159-22622350,22624834-226249...   105   5e-23
04_04_0192 - 23471346-23471572,23473004-23473195,23474342-234744...   101   6e-22
02_01_0022 - 135655-135717,137426-137482,137559-137678,137762-13...    40   0.002
03_02_0318 + 7417361-7417519,7417638-7417690,7417770-7417836,741...    40   0.003
01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856...    38   0.011
08_01_0357 + 3140610-3140612,3140742-3140900,3141027-3141068           31   0.93 
01_03_0065 + 12167808-12169148                                         28   8.6  

>02_04_0403 -
           22622014-22622075,22622159-22622350,22624834-22624910,
           22625026-22625039
          Length = 114

 Score =  105 bits (252), Expect = 5e-23
 Identities = 48/66 (72%), Positives = 58/66 (87%)
 Frame = +1

Query: 118 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 297
           MKLVRFLMKL++ETVTIELKNG+ VHGTITGVD++MNTHLK VK+TLK +  +  + LS+
Sbjct: 1   MKLVRFLMKLNNETVTIELKNGTTVHGTITGVDISMNTHLKTVKLTLKGKNPVTFDHLSV 60

Query: 298 RGNNIR 315
           RGNNIR
Sbjct: 61  RGNNIR 66


>04_04_0192 -
           23471346-23471572,23473004-23473195,23474342-23474418,
           23475810-23475850,23475928-23475974,23476108-23476194,
           23476807-23477011,23477747-23477866
          Length = 331

 Score =  101 bits (243), Expect = 6e-22
 Identities = 46/63 (73%), Positives = 57/63 (90%)
 Frame = +1

Query: 127 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 306
           +RFLMKL++ETVTIELKNG+VVHGTITGVD++MNTHLK VK+TLK +  + L+ LS+RGN
Sbjct: 166 LRFLMKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGN 225

Query: 307 NIR 315
           NIR
Sbjct: 226 NIR 228


>02_01_0022 -
           135655-135717,137426-137482,137559-137678,137762-137920
          Length = 132

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 21/63 (33%), Positives = 34/63 (53%)
 Frame = +1

Query: 127 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 306
           V+ L + +   VT+ELK G V  G++   +   N  L  +  T K+ +  QLE + IRG+
Sbjct: 9   VKLLHEAAGHVVTVELKTGEVYRGSMVECEDNWNCQLDNITFTAKDGKVSQLEHVFIRGS 68

Query: 307 NIR 315
            +R
Sbjct: 69  RVR 71


>03_02_0318 +
           7417361-7417519,7417638-7417690,7417770-7417836,
           7417925-7417981,7420005-7420067
          Length = 132

 Score = 39.9 bits (89), Expect = 0.003
 Identities = 21/63 (33%), Positives = 33/63 (52%)
 Frame = +1

Query: 127 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 306
           V+ L + +   VT+ELK G V  G +   +   N  L  +  T K+ +  QLE + IRG+
Sbjct: 9   VKLLHEAAGHVVTVELKTGEVYRGAMVECEDNWNCQLDNITFTAKDGKVSQLEHVFIRGS 68

Query: 307 NIR 315
            +R
Sbjct: 69  RVR 71


>01_01_1089 -
           8560008-8560220,8560456-8560977,8561095-8561283,
           8561377-8561642,8561967-8562111,8562411-8562530,
           8562611-8562930,8564161-8564341,8564434-8564580,
           8565186-8565497,8566303-8566450,8566592-8566765,
           8567385-8567446,8567499-8567571,8567628-8567683,
           8568370-8568645,8569541-8569588,8569870-8569991,
           8570258-8570413,8571037-8571079,8572624-8572701,
           8572972-8573070,8573168-8573209,8573302-8573304
          Length = 1264

 Score = 37.9 bits (84), Expect = 0.011
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +1

Query: 166 IELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNIR 315
           +ELKNG   +G +   D  MN HL+ V  T K+ ++  ++    IRGN I+
Sbjct: 17  VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIK 67


>08_01_0357 + 3140610-3140612,3140742-3140900,3141027-3141068
          Length = 67

 Score = 31.5 bits (68), Expect = 0.93
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 118 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKV 252
           M    +  +L  + VT+ELKN   + GT+  VD  +N  L+  +V
Sbjct: 1   MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRV 45


>01_03_0065 + 12167808-12169148
          Length = 446

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = -3

Query: 587 NKKHHENLIQSQISDLTYCDQVWLKIRFLSTGVRDLGLHDRLWGLRGHLGLCHDH 423
           NK  +E       S L  C  +     +L+   RD+  + R W  +    LCHD+
Sbjct: 353 NKLANEEEAAKFFSQLHACSYINYDEHYLAPVFRDINTYCRRWWPKRRARLCHDY 407


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,550,757
Number of Sequences: 37544
Number of extensions: 293794
Number of successful extensions: 590
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)