Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_F24
(889 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L36188-1|AAA85339.1| 119|Homo sapiens small nuclear ribonucleop... 124 3e-28
J03798-1|AAA36620.1| 119|Homo sapiens protein ( Human autoantig... 124 3e-28
CR542239-1|CAG47035.1| 119|Homo sapiens SNRPD1 protein. 124 3e-28
BC072427-1|AAH72427.1| 119|Homo sapiens small nuclear ribonucle... 124 3e-28
BC001721-1|AAH01721.1| 119|Homo sapiens small nuclear ribonucle... 124 3e-28
AJ577268-1|CAE11897.1| 119|Homo sapiens small nuclear ribonucle... 122 2e-27
BC007623-1|AAH07623.1| 123|Homo sapiens LSM10, U7 small nuclear... 45 4e-04
AF394685-1|AAL07689.1| 123|Homo sapiens U7 snRNA-associated Sm-... 45 4e-04
U15009-1|AAA57034.1| 126|Homo sapiens Sm D3 protein. 36 0.15
CR456583-1|CAG30469.1| 126|Homo sapiens SNRPD3 protein. 36 0.15
BC003150-1|AAH03150.1| 126|Homo sapiens small nuclear ribonucle... 36 0.15
BC000457-1|AAH00457.1| 126|Homo sapiens small nuclear ribonucle... 36 0.15
BC101321-1|AAI01322.1| 362|Homo sapiens SLC35F4 protein protein. 33 1.4
BC101320-1|AAI01321.1| 362|Homo sapiens SLC35F4 protein protein. 33 1.4
BC101318-1|AAI01319.1| 362|Homo sapiens SLC35F4 protein protein. 33 1.4
CR542157-1|CAG46954.1| 95|Homo sapiens LSM2 protein. 33 1.8
CR542146-1|CAG46943.1| 95|Homo sapiens LSM2 protein. 33 1.8
BC009192-1|AAH09192.1| 95|Homo sapiens LSM2 homolog, U6 small ... 33 1.8
BA000025-11|BAB63302.1| 95|Homo sapiens small nuclear ribonucl... 33 1.8
AL929592-3|CAI18462.1| 95|Homo sapiens LSM2 homolog, U6 small ... 33 1.8
AL671762-3|CAI18212.1| 95|Homo sapiens LSM2 homolog, U6 small ... 33 1.8
AL662834-14|CAI17733.1| 95|Homo sapiens LSM2 homolog, U6 small... 33 1.8
AJ245416-1|CAB52190.1| 95|Homo sapiens G7b protein protein. 33 1.8
AF196468-1|AAG33023.1| 95|Homo sapiens SMX5-like protein protein. 33 1.8
AF182288-1|AAD56226.1| 95|Homo sapiens U6 snRNA-associated Sm-... 33 1.8
AF136977-1|AAG49438.1| 95|Homo sapiens snRNP core SM-like prot... 33 1.8
AF134726-9|AAD21818.1| 95|Homo sapiens snRNP protein. 33 1.8
AK023807-1|BAB14687.1| 1424|Homo sapiens protein ( Homo sapiens ... 31 4.2
BC023665-1|AAH23665.1| 139|Homo sapiens LSM4 homolog, U6 small ... 31 5.6
BC022198-1|AAH22198.1| 139|Homo sapiens LSM4 homolog, U6 small ... 31 5.6
BC003652-1|AAH03652.1| 139|Homo sapiens LSM4 homolog, U6 small ... 31 5.6
BC000387-1|AAH00387.1| 139|Homo sapiens LSM4 homolog, U6 small ... 31 5.6
AJ238096-1|CAB45867.1| 139|Homo sapiens Lsm4 protein protein. 31 5.6
AF251218-1|AAF90055.1| 139|Homo sapiens LSm4 autoantigen protein. 31 5.6
AF182290-1|AAD56228.1| 139|Homo sapiens U6 snRNA-associated Sm-... 31 5.6
AF117235-1|AAF17216.1| 139|Homo sapiens glycine-rich protein pr... 31 5.6
BC104904-1|AAI04905.1| 1944|Homo sapiens anaphase promoting comp... 30 9.8
BC104902-1|AAI04903.1| 1944|Homo sapiens anaphase promoting comp... 30 9.8
BC008590-1|AAH08590.1| 432|Homo sapiens GRAM domain containing ... 30 9.8
AY116970-1|AAM77213.1| 432|Homo sapiens HCV NS3-transactivated ... 30 9.8
AK024966-1|BAB15045.1| 432|Homo sapiens protein ( Homo sapiens ... 30 9.8
AJ278357-1|CAC19484.1| 1944|Homo sapiens Tsg24 protein protein. 30 9.8
>L36188-1|AAA85339.1| 119|Homo sapiens small nuclear
ribonucleoprotein protein.
Length = 119
Score = 124 bits (300), Expect = 3e-28
Identities = 60/66 (90%), Positives = 64/66 (96%)
Frame = +1
Query: 118 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 297
MKLVRFLMKLSHETVTIELKNG+ VHGTITGVDV+MNTHLKAVK+TLKNRE +QLETLSI
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 298 RGNNIR 315
RGNNIR
Sbjct: 61 RGNNIR 66
>J03798-1|AAA36620.1| 119|Homo sapiens protein ( Human autoantigen
small nuclear ribonucleoprotein Sm-D mRNA, complete cds.
).
Length = 119
Score = 124 bits (300), Expect = 3e-28
Identities = 60/66 (90%), Positives = 64/66 (96%)
Frame = +1
Query: 118 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 297
MKLVRFLMKLSHETVTIELKNG+ VHGTITGVDV+MNTHLKAVK+TLKNRE +QLETLSI
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 298 RGNNIR 315
RGNNIR
Sbjct: 61 RGNNIR 66
>CR542239-1|CAG47035.1| 119|Homo sapiens SNRPD1 protein.
Length = 119
Score = 124 bits (300), Expect = 3e-28
Identities = 60/66 (90%), Positives = 64/66 (96%)
Frame = +1
Query: 118 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 297
MKLVRFLMKLSHETVTIELKNG+ VHGTITGVDV+MNTHLKAVK+TLKNRE +QLETLSI
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 298 RGNNIR 315
RGNNIR
Sbjct: 61 RGNNIR 66
>BC072427-1|AAH72427.1| 119|Homo sapiens small nuclear
ribonucleoprotein D1 polypeptide 16kDa protein.
Length = 119
Score = 124 bits (300), Expect = 3e-28
Identities = 60/66 (90%), Positives = 64/66 (96%)
Frame = +1
Query: 118 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 297
MKLVRFLMKLSHETVTIELKNG+ VHGTITGVDV+MNTHLKAVK+TLKNRE +QLETLSI
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 298 RGNNIR 315
RGNNIR
Sbjct: 61 RGNNIR 66
>BC001721-1|AAH01721.1| 119|Homo sapiens small nuclear
ribonucleoprotein D1 polypeptide 16kDa protein.
Length = 119
Score = 124 bits (300), Expect = 3e-28
Identities = 60/66 (90%), Positives = 64/66 (96%)
Frame = +1
Query: 118 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 297
MKLVRFLMKLSHETVTIELKNG+ VHGTITGVDV+MNTHLKAVK+TLKNRE +QLETLSI
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 298 RGNNIR 315
RGNNIR
Sbjct: 61 RGNNIR 66
>AJ577268-1|CAE11897.1| 119|Homo sapiens small nuclear
ribonucleoprotein Sm D1 protein.
Length = 119
Score = 122 bits (294), Expect = 2e-27
Identities = 59/66 (89%), Positives = 63/66 (95%)
Frame = +1
Query: 118 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 297
MKLVRFLMKLSHETV IELKNG+ VHGTITGVDV+MNTHLKAVK+TLKNRE +QLETLSI
Sbjct: 1 MKLVRFLMKLSHETVIIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 298 RGNNIR 315
RGNNIR
Sbjct: 61 RGNNIR 66
>BC007623-1|AAH07623.1| 123|Homo sapiens LSM10, U7 small nuclear
RNA associated protein.
Length = 123
Score = 44.8 bits (101), Expect = 4e-04
Identities = 23/68 (33%), Positives = 35/68 (51%)
Frame = +1
Query: 112 SRMKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETL 291
S L+ L L T++L++ SV HG I VD MN L V T + +++L+ L
Sbjct: 13 SENSLIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQVKLDDL 72
Query: 292 SIRGNNIR 315
+ G N+R
Sbjct: 73 FVTGRNVR 80
>AF394685-1|AAL07689.1| 123|Homo sapiens U7 snRNA-associated
Sm-like protein LSM10 protein.
Length = 123
Score = 44.8 bits (101), Expect = 4e-04
Identities = 23/68 (33%), Positives = 35/68 (51%)
Frame = +1
Query: 112 SRMKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETL 291
S L+ L L T++L++ SV HG I VD MN L V T + +++L+ L
Sbjct: 13 SENSLIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQVKLDDL 72
Query: 292 SIRGNNIR 315
+ G N+R
Sbjct: 73 FVTGRNVR 80
>U15009-1|AAA57034.1| 126|Homo sapiens Sm D3 protein.
Length = 126
Score = 36.3 bits (80), Expect = 0.15
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +1
Query: 127 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 306
++ L + VT E G V G + + MN + + VT ++ QLE + IRG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 307 NIR 315
IR
Sbjct: 67 KIR 69
>CR456583-1|CAG30469.1| 126|Homo sapiens SNRPD3 protein.
Length = 126
Score = 36.3 bits (80), Expect = 0.15
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +1
Query: 127 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 306
++ L + VT E G V G + + MN + + VT ++ QLE + IRG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 307 NIR 315
IR
Sbjct: 67 KIR 69
>BC003150-1|AAH03150.1| 126|Homo sapiens small nuclear
ribonucleoprotein D3 polypeptide 18kDa protein.
Length = 126
Score = 36.3 bits (80), Expect = 0.15
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +1
Query: 127 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 306
++ L + VT E G V G + + MN + + VT ++ QLE + IRG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 307 NIR 315
IR
Sbjct: 67 KIR 69
>BC000457-1|AAH00457.1| 126|Homo sapiens small nuclear
ribonucleoprotein D3 polypeptide 18kDa protein.
Length = 126
Score = 36.3 bits (80), Expect = 0.15
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +1
Query: 127 VRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSIRGN 306
++ L + VT E G V G + + MN + + VT ++ QLE + IRG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 307 NIR 315
IR
Sbjct: 67 KIR 69
>BC101321-1|AAI01322.1| 362|Homo sapiens SLC35F4 protein protein.
Length = 362
Score = 33.1 bits (72), Expect = 1.4
Identities = 22/83 (26%), Positives = 38/83 (45%)
Frame = -3
Query: 341 GRLSGSR*YRILFPRILKVSNCSSSRFFNVTFTAFKCVFIATSTPVIVP*TTLPFFNSIV 162
G S S Y++LF L +N + F T F +FI + TPVI+ T + ++S
Sbjct: 179 GSASTSALYKVLFKMFLGSANFGEAAHFVSTLGFFNLIFI-SFTPVILYFTKVEHWSSFA 237
Query: 161 TVSWLSFIKNLTSFILLDLLTNL 93
+ W ++ ++L N+
Sbjct: 238 ALPWGCLCGMAGLWLAFNILVNV 260
>BC101320-1|AAI01321.1| 362|Homo sapiens SLC35F4 protein protein.
Length = 362
Score = 33.1 bits (72), Expect = 1.4
Identities = 22/83 (26%), Positives = 38/83 (45%)
Frame = -3
Query: 341 GRLSGSR*YRILFPRILKVSNCSSSRFFNVTFTAFKCVFIATSTPVIVP*TTLPFFNSIV 162
G S S Y++LF L +N + F T F +FI + TPVI+ T + ++S
Sbjct: 179 GSASTSALYKVLFKMFLGSANFGEAAHFVSTLGFFNLIFI-SFTPVILYFTKVEHWSSFA 237
Query: 161 TVSWLSFIKNLTSFILLDLLTNL 93
+ W ++ ++L N+
Sbjct: 238 ALPWGCLCGMAGLWLAFNILVNV 260
>BC101318-1|AAI01319.1| 362|Homo sapiens SLC35F4 protein protein.
Length = 362
Score = 33.1 bits (72), Expect = 1.4
Identities = 22/83 (26%), Positives = 38/83 (45%)
Frame = -3
Query: 341 GRLSGSR*YRILFPRILKVSNCSSSRFFNVTFTAFKCVFIATSTPVIVP*TTLPFFNSIV 162
G S S Y++LF L +N + F T F +FI + TPVI+ T + ++S
Sbjct: 179 GSASTSALYKVLFKMFLGSANFGEAAHFVSTLGFFNLIFI-SFTPVILYFTKVEHWSSFA 237
Query: 161 TVSWLSFIKNLTSFILLDLLTNL 93
+ W ++ ++L N+
Sbjct: 238 ALPWGCLCGMAGLWLAFNILVNV 260
>CR542157-1|CAG46954.1| 95|Homo sapiens LSM2 protein.
Length = 95
Score = 32.7 bits (71), Expect = 1.8
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 118 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 291
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 292 SIRGNNIR 315
IRG+ +R
Sbjct: 61 FIRGSVVR 68
>CR542146-1|CAG46943.1| 95|Homo sapiens LSM2 protein.
Length = 95
Score = 32.7 bits (71), Expect = 1.8
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 118 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 291
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 292 SIRGNNIR 315
IRG+ +R
Sbjct: 61 FIRGSVVR 68
>BC009192-1|AAH09192.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 95
Score = 32.7 bits (71), Expect = 1.8
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 118 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 291
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 292 SIRGNNIR 315
IRG+ +R
Sbjct: 61 FIRGSVVR 68
>BA000025-11|BAB63302.1| 95|Homo sapiens small nuclear ribonuclear
protein D homolog protein.
Length = 95
Score = 32.7 bits (71), Expect = 1.8
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 118 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 291
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 292 SIRGNNIR 315
IRG+ +R
Sbjct: 61 FIRGSVVR 68
>AL929592-3|CAI18462.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.ta 2 protein.
Length = 95
Score = 32.7 bits (71), Expect = 1.8
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 118 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 291
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 292 SIRGNNIR 315
IRG+ +R
Sbjct: 61 FIRGSVVR 68
>AL671762-3|CAI18212.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.ta 2 protein.
Length = 95
Score = 32.7 bits (71), Expect = 1.8
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 118 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 291
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 292 SIRGNNIR 315
IRG+ +R
Sbjct: 61 FIRGSVVR 68
>AL662834-14|CAI17733.1| 95|Homo sapiens LSM2 homolog, U6 small
nuclear RNA associated (S.pha 3 (pseudogene) protein.
Length = 95
Score = 32.7 bits (71), Expect = 1.8
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 118 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 291
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 292 SIRGNNIR 315
IRG+ +R
Sbjct: 61 FIRGSVVR 68
>AJ245416-1|CAB52190.1| 95|Homo sapiens G7b protein protein.
Length = 95
Score = 32.7 bits (71), Expect = 1.8
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 118 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 291
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 292 SIRGNNIR 315
IRG+ +R
Sbjct: 61 FIRGSVVR 68
>AF196468-1|AAG33023.1| 95|Homo sapiens SMX5-like protein protein.
Length = 95
Score = 32.7 bits (71), Expect = 1.8
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 118 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 291
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 292 SIRGNNIR 315
IRG+ +R
Sbjct: 61 FIRGSVVR 68
>AF182288-1|AAD56226.1| 95|Homo sapiens U6 snRNA-associated
Sm-like protein LSm2 protein.
Length = 95
Score = 32.7 bits (71), Expect = 1.8
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 118 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 291
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 292 SIRGNNIR 315
IRG+ +R
Sbjct: 61 FIRGSVVR 68
>AF136977-1|AAG49438.1| 95|Homo sapiens snRNP core SM-like protein
SM-x5 protein.
Length = 95
Score = 32.7 bits (71), Expect = 1.8
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 118 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 291
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 292 SIRGNNIR 315
IRG+ +R
Sbjct: 61 FIRGSVVR 68
>AF134726-9|AAD21818.1| 95|Homo sapiens snRNP protein.
Length = 95
Score = 32.7 bits (71), Expect = 1.8
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 118 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVT--LKNREELQLETL 291
M F L + V +ELKN + GT+ VD +N L + VT K L ++
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 292 SIRGNNIR 315
IRG+ +R
Sbjct: 61 FIRGSVVR 68
>AK023807-1|BAB14687.1| 1424|Homo sapiens protein ( Homo sapiens
cDNA FLJ13745 fis, clone PLACE3000244, highly similar to
PROTEIN TSG24 (MEIOTIC CHECK POINT REGULATOR). ).
Length = 1424
Score = 31.5 bits (68), Expect = 4.2
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Frame = +1
Query: 88 HDKLVNKSSRMK----LVRFLMKLSHETVTIELKNGSVVHGTITGVDVA--MNTHLKAVK 249
HD L N+ + + + H VT+EL NGSVV TI + + + T L+A+K
Sbjct: 47 HDSLYNEDCTFQQLGTYIHSIRDPVHNRVTLELSNGSVVRITIPEIATSELVQTCLQAIK 106
Query: 250 VTLKNREELQL 282
L +Q+
Sbjct: 107 FILPKEIAVQM 117
>BC023665-1|AAH23665.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 31.1 bits (67), Expect = 5.6
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 136 LMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNI 312
L + + +ELKNG +G + D MN +L+ V T ++ ++ ++ IRG+ I
Sbjct: 7 LKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
Query: 313 R 315
+
Sbjct: 67 K 67
>BC022198-1|AAH22198.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 31.1 bits (67), Expect = 5.6
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 136 LMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNI 312
L + + +ELKNG +G + D MN +L+ V T ++ ++ ++ IRG+ I
Sbjct: 7 LKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
Query: 313 R 315
+
Sbjct: 67 K 67
>BC003652-1|AAH03652.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 31.1 bits (67), Expect = 5.6
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 136 LMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNI 312
L + + +ELKNG +G + D MN +L+ V T ++ ++ ++ IRG+ I
Sbjct: 7 LKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
Query: 313 R 315
+
Sbjct: 67 K 67
>BC000387-1|AAH00387.1| 139|Homo sapiens LSM4 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 139
Score = 31.1 bits (67), Expect = 5.6
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 136 LMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNI 312
L + + +ELKNG +G + D MN +L+ V T ++ ++ ++ IRG+ I
Sbjct: 7 LKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
Query: 313 R 315
+
Sbjct: 67 K 67
>AJ238096-1|CAB45867.1| 139|Homo sapiens Lsm4 protein protein.
Length = 139
Score = 31.1 bits (67), Expect = 5.6
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 136 LMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNI 312
L + + +ELKNG +G + D MN +L+ V T ++ ++ ++ IRG+ I
Sbjct: 7 LKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
Query: 313 R 315
+
Sbjct: 67 K 67
>AF251218-1|AAF90055.1| 139|Homo sapiens LSm4 autoantigen protein.
Length = 139
Score = 31.1 bits (67), Expect = 5.6
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 136 LMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNI 312
L + + +ELKNG +G + D MN +L+ V T ++ ++ ++ IRG+ I
Sbjct: 7 LKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
Query: 313 R 315
+
Sbjct: 67 K 67
>AF182290-1|AAD56228.1| 139|Homo sapiens U6 snRNA-associated
Sm-like protein LSm4 protein.
Length = 139
Score = 31.1 bits (67), Expect = 5.6
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 136 LMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNI 312
L + + +ELKNG +G + D MN +L+ V T ++ ++ ++ IRG+ I
Sbjct: 7 LKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
Query: 313 R 315
+
Sbjct: 67 K 67
>AF117235-1|AAF17216.1| 139|Homo sapiens glycine-rich protein
protein.
Length = 139
Score = 31.1 bits (67), Expect = 5.6
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 136 LMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREEL-QLETLSIRGNNI 312
L + + +ELKNG +G + D MN +L+ V T ++ ++ ++ IRG+ I
Sbjct: 7 LKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTI 66
Query: 313 R 315
+
Sbjct: 67 K 67
>BC104904-1|AAI04905.1| 1944|Homo sapiens anaphase promoting complex
subunit 1 protein.
Length = 1944
Score = 30.3 bits (65), Expect = 9.8
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Frame = +1
Query: 88 HDKLVNKSSRMK----LVRFLMKLSHETVTIELKNGSVVHGTITGVDVA--MNTHLKAVK 249
HD L N+ + + + H VT+EL NGS+V TI + + + T L+A+K
Sbjct: 567 HDSLYNEDCTFQQLGTYIHSIRDPVHNRVTLELSNGSMVRITIPEIATSELVQTCLQAIK 626
Query: 250 VTLKNREELQL 282
L +Q+
Sbjct: 627 FILPKEIAVQM 637
>BC104902-1|AAI04903.1| 1944|Homo sapiens anaphase promoting complex
subunit 1 protein.
Length = 1944
Score = 30.3 bits (65), Expect = 9.8
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Frame = +1
Query: 88 HDKLVNKSSRMK----LVRFLMKLSHETVTIELKNGSVVHGTITGVDVA--MNTHLKAVK 249
HD L N+ + + + H VT+EL NGS+V TI + + + T L+A+K
Sbjct: 567 HDSLYNEDCTFQQLGTYIHSIRDPVHNRVTLELSNGSMVRITIPEIATSELVQTCLQAIK 626
Query: 250 VTLKNREELQL 282
L +Q+
Sbjct: 627 FILPKEIAVQM 637
>BC008590-1|AAH08590.1| 432|Homo sapiens GRAM domain containing 3
protein.
Length = 432
Score = 30.3 bits (65), Expect = 9.8
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 79 ICFHDKLVNKSSRMKLVRFLMKLSHETVTIELKNGSVVHGTIT 207
ICFH K+ K +++ + F + L +T T L +++ T+T
Sbjct: 150 ICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVT 192
>AY116970-1|AAM77213.1| 432|Homo sapiens HCV NS3-transactivated
protein 2 protein.
Length = 432
Score = 30.3 bits (65), Expect = 9.8
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 79 ICFHDKLVNKSSRMKLVRFLMKLSHETVTIELKNGSVVHGTIT 207
ICFH K+ K +++ + F + L +T T L +++ T+T
Sbjct: 150 ICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVT 192
>AK024966-1|BAB15045.1| 432|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21313 fis, clone COL02176. ).
Length = 432
Score = 30.3 bits (65), Expect = 9.8
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 79 ICFHDKLVNKSSRMKLVRFLMKLSHETVTIELKNGSVVHGTIT 207
ICFH K+ K +++ + F + L +T T L +++ T+T
Sbjct: 150 ICFHSKVFGKDTKISIPAFSVTLIKKTKTALLVPNALIIATVT 192
>AJ278357-1|CAC19484.1| 1944|Homo sapiens Tsg24 protein protein.
Length = 1944
Score = 30.3 bits (65), Expect = 9.8
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Frame = +1
Query: 88 HDKLVNKSSRMK----LVRFLMKLSHETVTIELKNGSVVHGTITGVDVA--MNTHLKAVK 249
HD L N+ + + + H VT+EL NGS+V TI + + + T L+A+K
Sbjct: 567 HDSLYNEDCTFQQLGTYIHSIRDPVHNRVTLELSNGSMVRITIPEIATSELVQTCLQAIK 626
Query: 250 VTLKNREELQL 282
L +Q+
Sbjct: 627 FILPKEIAVQM 637
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,137,488
Number of Sequences: 237096
Number of extensions: 1671185
Number of successful extensions: 2376
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 2335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2376
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11381686510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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