Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_F24
(889 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28738-8|AAA68313.1| 126|Caenorhabditis elegans Small nuclear r... 109 3e-24
U20864-9|AAC46661.1| 123|Caenorhabditis elegans Lsm sm-like pro... 33 0.27
Z81118-7|CAB03328.3| 97|Caenorhabditis elegans Hypothetical pr... 30 1.9
AC025726-13|AAK73913.1| 77|Caenorhabditis elegans Lsm sm-like ... 30 2.5
Z99267-1|CAB16465.1| 732|Caenorhabditis elegans C33A12.12 protein. 29 4.4
Z68493-14|CAA92801.1| 732|Caenorhabditis elegans Hypothetical p... 29 4.4
AL033537-1|CAA22147.1| 732|Caenorhabditis elegans Hypothetical ... 29 4.4
AF016427-1|AAB65351.1| 594|Caenorhabditis elegans Hypothetical ... 29 4.4
Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical pr... 29 5.9
>U28738-8|AAA68313.1| 126|Caenorhabditis elegans Small nuclear
ribonucleoproteinprotein 3 protein.
Length = 126
Score = 109 bits (262), Expect = 3e-24
Identities = 52/66 (78%), Positives = 60/66 (90%)
Frame = +1
Query: 118 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 297
MKLVRFLMKLSHETV IELKNG+ V GTI GVDVAMNTHL+AV +T+KN+E ++L+TLSI
Sbjct: 1 MKLVRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSI 60
Query: 298 RGNNIR 315
RGNNIR
Sbjct: 61 RGNNIR 66
>U20864-9|AAC46661.1| 123|Caenorhabditis elegans Lsm sm-like
protein protein 4 protein.
Length = 123
Score = 33.1 bits (72), Expect = 0.27
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 136 LMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREE-LQLETLSIRGNNI 312
L + + +ELKNG +G + D MN HL V T K+ ++ ++ +RG+ I
Sbjct: 8 LKTAQNHPMLVELKNGETYNGHLKACDSWMNIHLVDVIFTSKDGDKFFKMSEAYVRGSTI 67
Query: 313 R 315
+
Sbjct: 68 K 68
>Z81118-7|CAB03328.3| 97|Caenorhabditis elegans Hypothetical
protein T10G3.6 protein.
Length = 97
Score = 30.3 bits (65), Expect = 1.9
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = +1
Query: 118 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNR--EELQLETL 291
M F L + V +ELKN + GT+ VD +N L + V+ R + ++
Sbjct: 1 MLFFSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNMKLTDITVSDPERFPHMVSVKNC 60
Query: 292 SIRGNNIR 315
IRG+ +R
Sbjct: 61 FIRGSVVR 68
>AC025726-13|AAK73913.1| 77|Caenorhabditis elegans Lsm sm-like
protein protein 6 protein.
Length = 77
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +1
Query: 109 SSRMKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLET 288
S R FL K+ + V ++L +G G + +D MN L+ + + + +
Sbjct: 2 SKRQNPAEFLKKVIGKPVVVKLNSGVDYRGILACLDGYMNIALEQTEEYSNGQLQNKYGD 61
Query: 289 LSIRGNNI 312
IRGNN+
Sbjct: 62 AFIRGNNV 69
>Z99267-1|CAB16465.1| 732|Caenorhabditis elegans C33A12.12 protein.
Length = 732
Score = 29.1 bits (62), Expect = 4.4
Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +1
Query: 40 LKILDALSRTDAVICFHDKLVNKSSRMK-LVRFLMKLSHETVT-IELKNGSVVHGTITGV 213
LK LD S TD F D L+N +K +V + L IEL NGS + TI +
Sbjct: 256 LKFLDC-SGTDICQYFLDNLLNTHDNLKQIVTWNTHLEDAVKAGIELLNGSTITTTINSL 314
Query: 214 DVAMNTHLKA 243
MN KA
Sbjct: 315 VHYMNLKRKA 324
>Z68493-14|CAA92801.1| 732|Caenorhabditis elegans Hypothetical
protein C33A12.12 protein.
Length = 732
Score = 29.1 bits (62), Expect = 4.4
Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +1
Query: 40 LKILDALSRTDAVICFHDKLVNKSSRMK-LVRFLMKLSHETVT-IELKNGSVVHGTITGV 213
LK LD S TD F D L+N +K +V + L IEL NGS + TI +
Sbjct: 256 LKFLDC-SGTDICQYFLDNLLNTHDNLKQIVTWNTHLEDAVKAGIELLNGSTITTTINSL 314
Query: 214 DVAMNTHLKA 243
MN KA
Sbjct: 315 VHYMNLKRKA 324
>AL033537-1|CAA22147.1| 732|Caenorhabditis elegans Hypothetical
protein C33A12.12 protein.
Length = 732
Score = 29.1 bits (62), Expect = 4.4
Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +1
Query: 40 LKILDALSRTDAVICFHDKLVNKSSRMK-LVRFLMKLSHETVT-IELKNGSVVHGTITGV 213
LK LD S TD F D L+N +K +V + L IEL NGS + TI +
Sbjct: 256 LKFLDC-SGTDICQYFLDNLLNTHDNLKQIVTWNTHLEDAVKAGIELLNGSTITTTINSL 314
Query: 214 DVAMNTHLKA 243
MN KA
Sbjct: 315 VHYMNLKRKA 324
>AF016427-1|AAB65351.1| 594|Caenorhabditis elegans Hypothetical
protein F32D1.1 protein.
Length = 594
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 199 TITGVDVAMNTHLKAVKVTLKNREELQ 279
T+ G++VA N H K + KNR +Q
Sbjct: 179 TLKGIEVASNPHFKKTRAPTKNRAAIQ 205
>Z81071-3|CAB03013.1| 91|Caenorhabditis elegans Hypothetical
protein F28F8.3 protein.
Length = 91
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +1
Query: 160 VTIELKNGSVVHGTITGVDVAMNTHLKAV---KVTLKNREELQLETLSIRGNNI 312
+ + +KN + GT+TG D +N L+ V + T + +L+T+ + GN+I
Sbjct: 26 IWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMTKLDTILLNGNHI 79
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,762,624
Number of Sequences: 27780
Number of extensions: 288630
Number of successful extensions: 589
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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