Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_F24
         (889 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    27   0.30 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    27   0.30 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    27   0.30 
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   8.6  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = -3

Query: 278 CSSSRFFNVTFTAFKCVFIATSTPVIVP*TTLPFFNSIVTVSWLSFIKNLTSFILLDLLT 99
           CSS RF+        C+ +     +I+    + FFN  ++  W++F     +  L+D++ 
Sbjct: 84  CSSFRFYWDL-----CMLLLLVANLIILPVAISFFNDDLSTRWIAFNCLSDTIFLIDIVV 138

Query: 98  N 96
           N
Sbjct: 139 N 139


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = -3

Query: 278 CSSSRFFNVTFTAFKCVFIATSTPVIVP*TTLPFFNSIVTVSWLSFIKNLTSFILLDLLT 99
           CSS RF+        C+ +     +I+    + FFN  ++  W++F     +  L+D++ 
Sbjct: 84  CSSFRFYWDL-----CMLLLLVANLIILPVAISFFNDDLSTRWIAFNCLSDTIFLIDIVV 138

Query: 98  N 96
           N
Sbjct: 139 N 139


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 26.6 bits (56), Expect = 0.30
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = -3

Query: 278 CSSSRFFNVTFTAFKCVFIATSTPVIVP*TTLPFFNSIVTVSWLSFIKNLTSFILLDLLT 99
           CSS RF+        C+ +     +I+    + FFN  ++  W++F     +  L+D++ 
Sbjct: 84  CSSFRFYWDL-----CMLLLLVANLIILPVAISFFNDDLSTRWIAFNCLSDTIFLIDIVV 138

Query: 98  N 96
           N
Sbjct: 139 N 139


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 639 TCKLLLKSIVVL*PKQNVFLDDFLHSDAGFLGSCNXNI 752
           T  L+ + ++    KQN+   D LH   G +G    NI
Sbjct: 36  TLNLMEQILLAKIEKQNLHESDDLHESDGRVGGKRRNI 73


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,859
Number of Sequences: 438
Number of extensions: 3752
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)