Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_F22
         (864 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0997 - 23203166-23203330,23203627-23203693,23203771-232038...    50   3e-06
03_02_0441 - 8517501-8517701,8518004-8518139,8519995-8520107,852...    45   9e-05
10_08_0616 + 19286014-19286928                                         29   6.3  

>07_03_0997 -
           23203166-23203330,23203627-23203693,23203771-23203862,
           23204820-23204956,23205050-23205116,23205212-23205278,
           23205356-23205441,23206061-23206153,23206337-23206522,
           23207316-23207372,23207455-23207582,23207662-23207731,
           23207815-23207950,23208378-23208529,23208606-23208680,
           23208765-23208929,23209063-23209128,23209229-23209333,
           23209929-23210132,23210462-23211715
          Length = 1123

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
 Frame = +2

Query: 368 PXYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQD-PNIKEAGIRMFTSVPG 544
           P  + +KVCD +SELA   + +   N W E L F+F  AS  + PN++E+ + +F  +  
Sbjct: 124 PKPIAKKVCDAISELAALLLPE---NAWAELLPFLFRAASGPEAPNLQESALLIFARLAD 180

Query: 545 VFGNRQTENLDVIKGMLISALQPNESMALRTQA 643
                  ++L  I  +L SAL    S  +R  A
Sbjct: 181 YIAESLLDHLMTIHNLLASALAHPTSPDVRIAA 213



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 12/117 (10%)
 Frame = +1

Query: 73  MAGDQAQFYQLLNTLLSTDNDIRSQAEDAYNNIP---TETKVVHLVNSIQNADIAEDVRQ 243
           + GD A F  LL+TL+S+ N  R+ AE A++ +     E   + L +S+ +     D+R 
Sbjct: 14  LGGDPAAFDALLSTLMSSSNADRAAAEAAFHRLRGSHPEPLALRLASSLSSPATPADLRA 73

Query: 244 TAAVLLRRLF---------SAXXXXXXXXXXXXQQTVLREQLLLTLQMDLSQXLTKK 387
            AAVLLR+L          SA             Q  L++ LL  LQ D  + + KK
Sbjct: 74  MAAVLLRKLLSPTPSSDASSAAAAPVWPHLSPAGQAALKQHLLSALQSDPPKPIAKK 130


>03_02_0441 -
           8517501-8517701,8518004-8518139,8519995-8520107,
           8520189-8520284,8520376-8520590,8520675-8520797,
           8520887-8520917,8521020-8521079,8521951-8522106,
           8522185-8522274,8522347-8522562,8522671-8522805,
           8522898-8523401,8523485-8523700,8524411-8524456,
           8524542-8524678,8525059-8525191,8526084-8526358
          Length = 960

 Score = 44.8 bits (101), Expect = 9e-05
 Identities = 27/111 (24%), Positives = 52/111 (46%)
 Frame = +2

Query: 377 LRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNIKEAGIRMFTSVPGVFGN 556
           +RR   +VVS +A+  +      +WPE L F+F C+ +   + +E  + +F+S+    G 
Sbjct: 95  VRRASANVVSIIAKYAVPA---GEWPELLPFIFQCSQSPQEDHREVALILFSSLTETIGT 151

Query: 557 RQTENLDVIKGMLISALQPNESMALRTQAX*SXXXXXXXXXXGANHTKAFQ 709
               +L+ ++ +L+  LQ   S  +R  A  +          G +  K F+
Sbjct: 152 TFQSHLNDLQPILLKCLQDEASSRVRIAALKAVGSFIEYVNDGGDVVKIFR 202



 Score = 36.7 bits (81), Expect = 0.024
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = +1

Query: 103 LLNTLLSTDNDIRSQAEDAYNNIPTETKVV-HLVNSIQNADIAEDVRQTAAVLLRR 267
           LL   L  DND R QAE+    +  + +VV  LV+ ++ A    +VRQ AAVLLR+
Sbjct: 8   LLIQFLMPDNDARRQAEEQIRRLARDPQVVPALVHHLRTAK-TPNVRQLAAVLLRK 62


>10_08_0616 + 19286014-19286928
          Length = 304

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 85  QAQFYQLLNTLLSTDNDIRSQAEDAYNNIP 174
           Q++ Y+ +   +S DND     +DA NN+P
Sbjct: 124 QSKLYEEIKATMSGDNDDEINEDDARNNLP 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,547,894
Number of Sequences: 37544
Number of extensions: 402174
Number of successful extensions: 892
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)