Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_F21
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    26   6.3  
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    26   6.3  

>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 453 HFWASASHVKVVEVPAQICYYSVTAYLQLSGNTR 554
           H+ +SA   + V VP  +C Y   AY+QL  N +
Sbjct: 583 HYISSARQYRPV-VPKDVCDYVTGAYVQLRQNQK 615


>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 312 SAASSQMGKLEESLLANTVPTRXNG 386
           SAA  Q+GKL+E+L+ +TV    +G
Sbjct: 225 SAAYEQLGKLDEALMDSTVSCIFDG 249


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,656,270
Number of Sequences: 5004
Number of extensions: 45743
Number of successful extensions: 102
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)