Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_F21
         (891 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0009 - 25535480-25535529,25536225-25536252,25536427-255364...    29   3.8  
03_01_0487 - 3704763-3705416                                           29   6.6  

>01_06_0009 -
           25535480-25535529,25536225-25536252,25536427-25536496,
           25537020-25537063,25538064-25538228,25538411-25538491,
           25539224-25540258
          Length = 490

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 389 KAVXSCWHSVCEQTFFKFSHLRRS 318
           K+V   WH++  + FF  SHLR S
Sbjct: 16  KSVCKAWHTIISEPFFIRSHLRHS 39


>03_01_0487 - 3704763-3705416
          Length = 217

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
 Frame = +1

Query: 256 WQNLANXFNSSIA--TVPRTAAQLRLKWENLKK 348
           W+++A+ FNS++      RT  Q++  W+N+K+
Sbjct: 125 WKDVADEFNSNMPRNAHTRTVKQMKTHWDNVKR 157


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,051,773
Number of Sequences: 37544
Number of extensions: 316917
Number of successful extensions: 688
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)