Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_F21
         (891 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   4.9  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    22   8.6  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   8.6  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   8.6  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   8.6  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   8.6  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 282 FVDRNRPPNCSAASSQMGKLEESLLANTVPTRXNGL 389
           ++   RP N    S    KLE+   A+++  R  GL
Sbjct: 13  YLSAGRPSNLLRTSFSSAKLEKLYRASSLQQRRGGL 48


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 546 NTRCRKSFAKLAYIETMP 599
           N  C+K +  + YIE +P
Sbjct: 101 NNNCKKLYYNINYIEQIP 118


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 546 NTRCRKSFAKLAYIETMP 599
           N  C+K +  + YIE +P
Sbjct: 106 NNNCKKLYYNINYIEQIP 123


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 546 NTRCRKSFAKLAYIETMP 599
           N  C+K +  + YIE +P
Sbjct: 106 NNNCKKLYYNINYIEQIP 123


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 546 NTRCRKSFAKLAYIETMP 599
           N  C+K +  + YIE +P
Sbjct: 106 NNNCKKLYYNINYIEQIP 123


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 546 NTRCRKSFAKLAYIETMP 599
           N  C+K +  + YIE +P
Sbjct: 106 NNNCKKLYYNINYIEQIP 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,312
Number of Sequences: 438
Number of extensions: 3284
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)