Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP13_F_F20
(889 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 287 1e-78
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 230 2e-61
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 133 3e-32
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 97 2e-21
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 54 4e-08
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 49 8e-07
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 46 7e-06
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 46 1e-05
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 44 3e-05
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 42 2e-04
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 41 2e-04
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 39 0.001
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 37 0.004
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 36 0.008
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 36 0.008
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 35 0.013
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 34 0.024
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 34 0.024
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 33 0.041
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 31 0.22
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 29 0.67
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 28 1.5
SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomy... 27 2.7
SPCC188.06c |srp54||signal recognition particle subunit Srp54|Sc... 27 4.7
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 26 6.2
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 287 bits (704), Expect = 1e-78
Identities = 133/172 (77%), Positives = 148/172 (86%)
Frame = +2
Query: 197 SSVFTRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTV 376
S +F LFGK++MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY+NISFTV
Sbjct: 6 SKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRNISFTV 65
Query: 377 WDVGGQDKIRPLWRHYYQNTQGLIFVVDSSDRKRIAEAENELANMLKEDELRDAVILVFA 556
WDVGGQDKIRPLWRHY+QNTQG+IFVVDS+DR+RI+EA EL ML EDELRDA++LVFA
Sbjct: 66 WDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFA 125
Query: 557 NKQDMPNAMTAAELTNAXXXXXXXXXXWYIQATCATQGQGLYEGLDWLSNXL 712
NKQD+PNAM AAE+T+ WYIQATCAT G GLYEGL+WLS L
Sbjct: 126 NKQDLPNAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNL 177
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 230 bits (563), Expect = 2e-61
Identities = 106/175 (60%), Positives = 128/175 (73%)
Frame = +2
Query: 197 SSVFTRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTV 376
S F+RLF K+MRILM+GLDAAGKTTILYKLKL + V TIPT+GFNVETV YKNI F V
Sbjct: 10 SKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNV 69
Query: 377 WDVGGQDKIRPLWRHYYQNTQGLIFVVDSSDRKRIAEAENELANMLKEDELRDAVILVFA 556
WDVGGQDKIRPLWRHY+ T+GLIFVVDS+D RI+EA EL ++ + E+RD ++LV A
Sbjct: 70 WDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLA 129
Query: 557 NKQDMPNAMTAAELTNAXXXXXXXXXXWYIQATCATQGQGLYEGLDWLSNXLXXK 721
NKQD+P A++ A++T+ W +Q TCA G GL EGL WLS K
Sbjct: 130 NKQDLPGALSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLSQNAKLK 184
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 133 bits (322), Expect = 3e-32
Identities = 63/164 (38%), Positives = 101/164 (61%), Gaps = 1/164 (0%)
Frame = +2
Query: 224 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNISFTVWDVGGQDK 400
++++R+L++GLD AGKTTIL K L E V + PT GF + T+E + + FT+WD+GGQ
Sbjct: 14 EREVRVLLLGLDNAGKTTIL-KCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQKT 72
Query: 401 IRPLWRHYYQNTQGLIFVVDSSDRKRIAEAENELANMLKEDELRDAVILVFANKQDMPNA 580
+R W++Y+++T+ +I+VVDS D R+ E N L +L E++L ILV ANK D+ A
Sbjct: 73 LRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGA 132
Query: 581 MTAAELTNAXXXXXXXXXXWYIQATCATQGQGLYEGLDWLSNXL 712
+++ E++ W I + A G + + + WL+N L
Sbjct: 133 LSSEEISKILNISKYKSSHWRIFSVSALTGLNIKDAISWLANDL 176
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 97.5 bits (232), Expect = 2e-21
Identities = 47/127 (37%), Positives = 74/127 (58%)
Frame = +2
Query: 227 KQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIR 406
K ++L +GLD AGKTT+L+ LK + PT+ E + N+ FT +D+GG + R
Sbjct: 19 KHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQAR 78
Query: 407 PLWRHYYQNTQGLIFVVDSSDRKRIAEAENELANMLKEDELRDAVILVFANKQDMPNAMT 586
LWR Y+ G++++VD D +R++E++ EL +L +EL L+ NK D P A++
Sbjct: 79 RLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVPFLILGNKIDAPGAIS 138
Query: 587 AAELTNA 607
EL A
Sbjct: 139 EDELKAA 145
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 53.6 bits (123), Expect = 4e-08
Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Frame = +2
Query: 233 MRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQD 397
+++L++G GK+ +L + + I TIG F + T+E K I +WD GQ+
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 398 KIRPLWRHYYQNTQGLIFVVDSSDRKRIAEAENELANMLKEDELRDAVILVFANKQD 568
+ R + YY+ G++ + D +D+K +N +++ + ++ NK D
Sbjct: 70 RFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSN-VEQHASENVYKILIGNKCD 125
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 49.2 bits (112), Expect = 8e-07
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Frame = +2
Query: 236 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVETVEY--KNISFTVWDVGGQDK 400
++L++G GK+ +L + + I TIG F + T E K + +WD GQ++
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 401 IRPLWRHYYQNTQGLIFVVDSSDRKRIAEAENELANMLKEDELRDAVILVFANKQDM 571
R + YY+ G+I V D +D+ + L + + L+ NK DM
Sbjct: 70 FRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQE-IDRYAVEGVNRLLVGNKSDM 125
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 46.0 bits (104), Expect = 7e-06
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Frame = +2
Query: 236 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVET----VEYKNISFTVWDVGGQDK 400
+ +++G GK+ +L + E + + TIG T ++ K I +WD GQ++
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 401 IRPLWRHYYQNTQGLIFVVDSSDRKRIAEAENELANMLKEDELRDAVILVFANKQDM 571
R + YY+ G + V D + + L L+E + VI++ NK D+
Sbjct: 72 YRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKE-LREHADSNIVIMLVGNKTDL 127
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 45.6 bits (103), Expect = 1e-05
Identities = 26/123 (21%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Frame = +2
Query: 218 FGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWD 382
F ++ +++ +G + GKT+++ + + T TIG + + +E + + +WD
Sbjct: 7 FSLRKFKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 66
Query: 383 VGGQDKIRPLWRHYYQNTQGLIFVVDSSDRKRIAEAENELANMLKEDELRDAVILVFANK 562
GQ++ R L Y +++ I V D ++ E + + ++ + D +I++ NK
Sbjct: 67 TAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIED-VRAERGDDVIIVLVGNK 125
Query: 563 QDM 571
D+
Sbjct: 126 TDL 128
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 44.0 bits (99), Expect = 3e-05
Identities = 21/76 (27%), Positives = 38/76 (50%)
Frame = +2
Query: 350 EYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSSDRKRIAEAENELANMLKEDEL 529
+ K I +WD GQ+K R + R+YY+ G + V D +++ E + L+++
Sbjct: 58 QQKRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPS 117
Query: 530 RDAVILVFANKQDMPN 577
V+L +K D+ N
Sbjct: 118 TICVVLA-GSKSDLQN 132
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 41.5 bits (93), Expect = 2e-04
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 6/130 (4%)
Frame = +2
Query: 236 RILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETV---EYKNISFTVWDVGGQD 397
+++++G A GK++++ + + TIG F +T+ E ++ +WD GQ+
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 398 KIRPLWRHYYQNTQGLIFVVDSSDRKRIAEAENELANMLKEDELRDAVILVFANKQDMPN 577
+ + L YY+N I V D + + +A++ + L+ VI + NK D+
Sbjct: 76 RYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKE-LQRQAPEGIVIALAGNKLDLAQ 134
Query: 578 AMTAAELTNA 607
A E +A
Sbjct: 135 ERRAVEKADA 144
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 41.1 bits (92), Expect = 2e-04
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Frame = +2
Query: 236 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQDK 400
++++VG GKTT + + GE I T+G V + + I F VWD GQ+K
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 401 IRPLWRHYYQNTQGLIFVVDSSDR 472
+ L YY Q I + D + R
Sbjct: 71 LGGLRDGYYIQGQCGIIMFDVTSR 94
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 38.7 bits (86), Expect = 0.001
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Frame = +2
Query: 236 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET---VEYKNISFTVWDVGGQDKI 403
++++VG A GKT++L LG T +PT+ N + V+ K++ +WD GQ++
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEY 69
Query: 404 RPLWRHYYQNTQGLI--FVVDSSD 469
L Y ++ F +DS D
Sbjct: 70 ERLRPMSYAKAHIILVGFAIDSPD 93
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 36.7 bits (81), Expect = 0.004
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +2
Query: 317 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVVDSSDRKRIAEAEN 496
I T G + ET + +DVGGQ R W H ++N L+F+V + + +N
Sbjct: 219 IKTTGISEETFLLNRHHYRFFDVGGQRSERRKWIHCFENVTALLFLVSLAGYDQCLVEDN 278
Query: 497 ELANMLKE 520
N ++E
Sbjct: 279 S-GNQMQE 285
Score = 25.8 bits (54), Expect = 8.2
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = +2
Query: 221 GKKQMRILMVGLDAAGKTTILYKLKL 298
G +++L++G +GKTTI+ +++L
Sbjct: 71 GGNDIKVLLLGAGDSGKTTIMKQMRL 96
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 35.9 bits (79), Expect = 0.008
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +2
Query: 323 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYYQNTQGLIFVV--DSSDRKRIAEAEN 496
T+G + + ++ ++DVGGQ R W + ++N +IF V + D+K A
Sbjct: 179 TLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLNDYDKKLYERAAP 238
Query: 497 ELANMLKEDELRDAVI 544
E +++ L D++I
Sbjct: 239 ERNRLVESISLFDSII 254
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 35.9 bits (79), Expect = 0.008
Identities = 21/88 (23%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Frame = +2
Query: 233 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNV--ETVEYKN--ISFTVWDVGGQD 397
+++ M+G + GKT+++ G + T+G N +T+ +N I+F++WD+GGQ
Sbjct: 11 IKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQR 70
Query: 398 KIRPLWRHYYQNTQGLIFVVDSSDRKRI 481
+ + + ++F+ D S + +
Sbjct: 71 EFVNMLPMVCNDAVAILFMFDLSRKSTL 98
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 35.1 bits (77), Expect = 0.013
Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 8/133 (6%)
Frame = +2
Query: 233 MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVWDVGGQD 397
++++++G GKT ++ + + TIG + T V+ K ++ +WD GQ+
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQE 68
Query: 398 KIRPLWRHYYQNTQGLIFVVDSSDRKRIAEAEN---ELANMLKEDELRDAVILVFANKQD 568
+ + L +Y+ + V + ++ K EN E +DE I+V N+ D
Sbjct: 69 RFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIV-GNQID 127
Query: 569 MPNAMTAAELTNA 607
+ A L A
Sbjct: 128 KDASKRAVSLHRA 140
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 34.3 bits (75), Expect = 0.024
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Frame = +2
Query: 221 GKKQ--MRILMVGLDAAGKTTILYKLKLGEIVTTIP-TIGFNVET----VEYKNISFTVW 379
GKK+ ++++++G GKT+I+ + + TIG + T V+ K ++ +W
Sbjct: 3 GKKKHLLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLW 62
Query: 380 DVGGQDKIRPLWRHYYQNTQGLIFVVDSSDRK 475
D GQ++ + L +Y+ + V D ++ K
Sbjct: 63 DTAGQERFQSLGVAFYRGADCCVLVYDVNNSK 94
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 34.3 bits (75), Expect = 0.024
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 6/84 (7%)
Frame = +2
Query: 236 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET---VEYKNISFTVWDVGGQDKI 403
+I+++G AAGKT++L G PTI N V+ +I ++WD GQ++
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEY 74
Query: 404 RPLWRHYYQNTQGLI--FVVDSSD 469
L Y +T ++ F VDS D
Sbjct: 75 DQLRSLSYSDTHVIMICFAVDSRD 98
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 33.5 bits (73), Expect = 0.041
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Frame = +2
Query: 236 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN-VETVEY--KNISFTVWDVGGQ--- 394
++++VG A GKT +L G +PT+ N V VE ++I +WD GQ
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDY 67
Query: 395 DKIRPL 412
D++RPL
Sbjct: 68 DRLRPL 73
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 31.1 bits (67), Expect = 0.22
Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 11/91 (12%)
Frame = +2
Query: 236 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF------TVWDVGGQD 397
++L++G +GK+++ + + +G ++ +E+ ++ F +WD GGQ+
Sbjct: 4 KVLLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATID-IEHSHVRFLGNLVLNLWDCGGQE 62
Query: 398 KIRPLW-----RHYYQNTQGLIFVVDSSDRK 475
+ H ++N Q LI+V D R+
Sbjct: 63 AFMENYLSAQRDHIFRNVQVLIYVFDVESRE 93
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 29.5 bits (63), Expect = 0.67
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Frame = +2
Query: 236 RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET-VEY----KNISFTVWDVGGQ- 394
++++VG GKT +L G +PT+ N T + Y K I +WD GQ
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQE 75
Query: 395 --DKIRPL 412
D++RPL
Sbjct: 76 EYDRLRPL 83
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 206 FTR-LFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY 355
FTR KK + ++G +GKT++ +L E TT+P+I N +Y
Sbjct: 28 FTRKTIQKKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIEPNEAVWKY 78
>SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +2
Query: 218 FGKKQMRILMVG-LDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWD 382
F K+ RIL VG L + + K GE+ +P +GF ++++ +N FT+++
Sbjct: 237 FLKEAYRILKVGGLLWVAEIKSRFSDKSGEVFAKELPKLGFETKSIQLQNKMFTLFE 293
>SPCC188.06c |srp54||signal recognition particle subunit
Srp54|Schizosaccharomyces pombe|chr 3|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +2
Query: 206 FTRLFGKKQMRILMVGLDAAGKTTILYKLKL 298
FT G+ + I+MVGL +GKTT KL L
Sbjct: 94 FTPKKGRPSV-IMMVGLQGSGKTTTCSKLAL 123
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 224 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIG 331
KKQ+ + ++G AGK++I+ L+ ++ P G
Sbjct: 308 KKQISVGLIGFPNAGKSSIINTLRKKKVCNVAPIPG 343
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,798,986
Number of Sequences: 5004
Number of extensions: 51792
Number of successful extensions: 175
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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