Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_F19
         (857 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like prote...    26   0.44 
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   3.1  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   4.1  
L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protei...    23   4.1  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    21   9.4  

>AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like protein
           protein.
          Length = 160

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 379 RKSLSHFLNML*IMP*CYLIYIFVESIYLEINDTIIT 269
           RK  SHF+         Y +++F  SIYL+I + + T
Sbjct: 88  RKYGSHFIESYVTGNALYQVFVFRRSIYLQIKERLKT 124


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = -1

Query: 503 SFLFASTTRGNNFSLQ*ALNESRTAFSS---SWSCPSKLNGSTQS 378
           SF+  +T       LQ  +NE +  +S+   S SCP   +GST S
Sbjct: 344 SFVCVNTLVSEQEGLQ-LINEMKKRYSALINSQSCPITSSGSTDS 387


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 381 IESHFRIS*ICCR*CPNAI*FTYSLKVYI 295
           ++SH  +    CR C  A  + +SLK+++
Sbjct: 278 MKSHSNVYRYSCRDCSYATKYCHSLKIHL 306


>L01615-1|AAA30095.1|   69|Tribolium castaneum zinc finger protein
           protein.
          Length = 69

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 381 IESHFRIS*ICCR*CPNAI*FTYSLKVYI 295
           ++SH  +    CR C  A  + +SLK+++
Sbjct: 36  MKSHSNVYRYSCRDCSYATKYCHSLKIHL 64


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 331 IRALSTTYSRNAKVTFDWVDPF 396
           I+ L T  +RN K    W  PF
Sbjct: 379 IKILKTVSNRNDKGDIFWFSPF 400


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,731
Number of Sequences: 336
Number of extensions: 3284
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23763101
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)