Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_F18
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    29   0.88 
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...    28   2.0  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    27   3.6  
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    26   8.2  

>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +1

Query: 319 TDFFLNSFSTLEARREFCETIKNLCSI--YRVFYCSVSASMQSCI 447
           T+F L   + L A  E+C+TIK   S    RVF C V       I
Sbjct: 720 TEFSLGCDTCLNAVMEYCDTIKQSASASRRRVFVCEVQGGRSGYI 764


>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = -3

Query: 724 SLSDHTICKTVYQYSNLVRFAYS 656
           S+  HT+CK+VY++ N++ + +S
Sbjct: 97  SVQYHTLCKSVYRHENVIGWYHS 119


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +1

Query: 466 FSNLRTFNQLFFREYNTSVILCIIKIFIQI 555
           F N+R  N++F    ++  I+C++  F+Q+
Sbjct: 391 FLNMRALNEVFLGGLSSYAIVCLVVSFLQL 420


>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +2

Query: 254 YGTNLR*QMKQKSSAIHDSFDIPIFF*IVLAHLRHAGSSVKLLKTCVVSI 403
           +G+N++  M       ++ FDI +   +V  H  H+    KL+K+C ++I
Sbjct: 137 WGSNIKEVMSNAGFKDNEVFDILLLSDLVFNHTEHS----KLIKSCKMAI 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,535,891
Number of Sequences: 5004
Number of extensions: 76129
Number of successful extensions: 155
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)