Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP13_F_F18
         (885 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384...    28   8.7  
02_05_0044 - 25375239-25376233,25377233-25377364,25377586-25378504     28   8.7  

>03_02_0740 - 10836752-10837052,10837756-10837814,10837901-10838476,
            10839965-10841686,10841776-10842173,10842264-10842318,
            10842989-10843048,10843444-10843540,10844885-10844955,
            10845029-10845109,10846054-10846124,10847951-10848119,
            10848521-10848683,10848752-10848942,10849037-10849168
          Length = 1381

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 447  NATLHRCRYRTIKYTIDTTQVFNSFT 370
            +ATL R   R+  YT DTTQ  NS++
Sbjct: 961  SATLRRSARRSYAYTDDTTQAKNSYS 986


>02_05_0044 - 25375239-25376233,25377233-25377364,25377586-25378504
          Length = 681

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 597 EYFILNFSVQKKITDLDENLNNTEYHRSIIFSE 499
           ++ + N SV+     +   LNNTEY R I+ ++
Sbjct: 318 QFIVTNVSVEDGTLTISNLLNNTEYGREILITQ 350


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,671,457
Number of Sequences: 37544
Number of extensions: 407101
Number of successful extensions: 686
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)